YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30041945, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30041945, gi|....

Description	E-value	Query Range	Subject Range
gi\|81241815, gi\|... - gi\|82777667\|ref\|YP_404016.1\| putative transport/receptor protein [Shigella dysenteriae Sd197], gi\|81...	262.0	[0..1]	[222..1]
gi\|81246151, gi\|... - gi\|82544740\|ref\|YP_408687.1\| putative transport/receptor protein [Shigella boydii Sb227], gi\|8124615...	261.0	[0..1]	[222..1]
gi\|209765322, gi... - gi\|25338016\|pir\|\|B85866 probable transport/receptor protein ECs3146 [imported] - Escherichia coli (s... gi\|13362616 - gi\|13362616\|dbj\|BAB36569.1\| putative transport/receptor protein [Escherichia coli O157:H7 str. Sakai... gi\|12516605, gi\|... - gi\|15802808\|ref\|NP_288835.1\| hypothetical protein Z3517 [Escherichia coli O157:H7 EDL933], gi\|125166... gi\|13362616 - gi\|13362616\|dbj\|BAB36569.1\| putative transport/receptor protein [Escherichia coli O157:H7]	260.0	[0..1]	[222..1]
gi\|49176203, gi\|... - gi\|49176203\|ref\|NP_416761.3\| hypothetical protein b2258 [Escherichia coli K12], gb\|AAC75318.1\| putat... gi\|7460138 - gi\|7460138\|pir\|\|H64996 hypothetical protein b2258 - Escherichia coli (strain K-12) gi\|73856257, gi\|... - gi\|74312780\|ref\|YP_311199.1\| putative transport/receptor protein [Shigella sonnei Ss046], gi\|7385625...	257.0	[0..1]	[222..1]
gi\|218365944, gi... - gi\|218559175\|ref\|YP_002392088.1\| hypothetical protein ECS88_2409 [Escherichia coli S88], gi\|21836594... gi\|91073127, gi\|... - gi\|91211553\|ref\|YP_541539.1\| hypothetical protein UTI89_C2541 [Escherichia coli UTI89], gi\|91073127\|... gi\|117624451, gi... - gi\|117624451\|ref\|YP_853364.1\| hypothetical protein APECO1_4303 [Escherichia coli APEC O1], gi\|115513...	248.0	[0..1]	[222..1]
gi\|26109052, gi\|... - gi\|26248647\|ref\|NP_754687.1\| hypothetical protein c2801 [Escherichia coli CFT073], gi\|26109052\|gb\|AA...	241.0	[0..1]	[222..1]
gi\|22125816, gi\|... - gi\|22125816\|ref\|NP_669239.1\| hypothetical protein y1923 [Yersinia pestis KIM], gi\|21958743\|gb\|AAM854...	130.0	[0..79]	[219..3]
gi\|84180564 - gi\|84180564\|gb\|ABC54729.1\| ORF3/QacEdelta1 fusion protein [Vibrio cholerae] gi\|148615590 - gi\|148615590\|gb\|ABQ96632.1\| Orf3/QacEdelta1 fusion protein [Salmonella enterica subsp. enterica sero... gi\|20086228 - gi\|20086228\|gb\|AAM03346.1\| ORF3-QacEdelta1 fusion protein [Proteus mirabilis] gi\|118511776 - gi\|118511776\|emb\|CAD20940.2\| ORF3-QacE (3'CS2) fusion protein [Salmonella enterica subsp. enterica s... gi\|74055072 - gi\|74055072\|gb\|AAZ95873.1\| ORF3-QacEdelta1 fusion protein [Escherichia coli]	118.0	[0..90]	[218..211]
gi\|14022068, gi\|... - gi\|14022068\|dbj\|BAB48678.1\| mll1264 [Mesorhizobium loti MAFF303099], gi\|13471323\|ref\|NP_102892.1\| hy...	117.0	[0..90]	[220..2]
gi\|45436856, gi\|... - gi\|45441993\|ref\|NP_993532.1\| hypothetical protein YP_2203 [Yersinia pestis biovar Microtus str. 9100...	116.0	[0..94]	[219..4]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETGNLLCG DKQTAQTYRA VAGTGAGLSW SCHDALAAGL AERTGRHCLP DVKSEFCLGD  60
   61 AGCSKTVART GIAASLVWGG VH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [83-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YWWHCDPREY GVMCLIWGLF SVIIASVAQL SLGFAASHLP PMTHLWDFIA ALLAFGLDAR  60
   61 ILLLGLLGYL LSVFCWYKTL HKLALSKAYA LLSMSYVLVW IASMVLPGWE GTFSLKALLG 120
  121 VACIMSGLML IFLPTTKQRY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.30103
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits