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View Structure Prediction Details

Protein: ATPF_COXBU
Organism: Coxiella burnetii RSA 493
Length: 156 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATPF_COXBU.

Description E-value Query
Range		 Subject
Range
ATPF_AMBTC - ATP synthase subunit b, chloroplastic OS=Amborella trichopoda GN=atpF PE=3 SV=1
 117.0 [0..2] [156..21]
gi|69215356 - gi|69215356|gb|AAZ03830.1| ATP synthase CF0 B chain [Ginkgo biloba]
 115.0 [0..2] [153..21]
gi|82754615 - gi|82754615|gb|ABB90029.1| ATP synthase CF0 B chain [Solanum tuberosum]
 115.0 [0..2] [156..21]
ATPF_ACOCL - ATP synthase subunit b, chloroplastic OS=Acorus calamus GN=atpF PE=3 SV=1
gi|69215354, gi|... - gi|69215354|gb|AAZ03829.1| ATP synthase CF0 B chain [Acorus americanus], gi|161622296|ref|YP_0015861...
 114.0 [0..2] [156..21]
ATPF_VITVI - ATP synthase subunit b, chloroplastic OS=Vitis vinifera GN=atpF PE=3 SV=1
 112.0 [0..2] [153..21]
ATPF_SPIOL - ATP synthase subunit b, chloroplastic OS=Spinacia oleracea GN=atpF PE=3 SV=1
 112.0 [0..2] [153..21]
ATPF_TOBAC - ATP synthase subunit b, chloroplastic OS=Nicotiana tabacum GN=atpF PE=2 SV=3
 112.0 [0..2] [156..21]
ATPF_SOLLC - ATP synthase subunit b, chloroplastic OS=Solanum lycopersicum GN=atpF PE=3 SV=1
ATPF_SOLTU - ATP synthase subunit b, chloroplastic OS=Solanum tuberosum GN=atpF PE=3 SV=1
ATPF_SOLBU - ATP synthase subunit b, chloroplastic OS=Solanum bulbocastanum GN=atpF PE=3 SV=1
 112.0 [0..2] [156..21]
ATPF_PLAOC - ATP synthase subunit b, chloroplastic OS=Platanus occidentalis GN=atpF PE=3 SV=1
 112.0 [0..2] [153..21]
gi|81238325, gi|... - gi|81238325|ref|NP_054482.2| ATP synthase CF0 B subunit [Nicotiana tabacum], gi|76559638|emb|CAA7734...
ATPF_NICSY - ATP synthase subunit b, chloroplastic OS=Nicotiana sylvestris GN=atpF PE=3 SV=1
 112.0 [0..2] [156..21]

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Predicted Domain #1
Region A:
Residues: [1-66] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDINASLIVQ MLVFVVFIGL TMKFIWPPLT KALEARRKNI ADGLAAAEEG RKELELAEIK  60
   61 SKEQLT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [67-156] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAKTQAAHII EQANQRANHI VEEAKNKARE EGAHLIQLAK NEIEQEYNAA KTELLKQIST  60
   61 IAVAGAQKIL QREVDKASND RLVDELVSEI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.0
Match: 1l2pA
Description: F1F0 ATP synthase subunit B, membrane domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrogen ion transporting ATP synthase activity, rotational mechanism 13.4958765229456 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 11.6977167590263 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 9.95066935525283 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 8.85439283401521 bayes_pls_golite062009
cation transmembrane transporter activity 5.13805155650973 bayes_pls_golite062009
ion transmembrane transporter activity 5.04374327766634 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 4.64120459994573 bayes_pls_golite062009
transporter activity 2.93091397928047 bayes_pls_golite062009
transmembrane transporter activity 2.82224868778929 bayes_pls_golite062009
substrate-specific transporter activity 2.79688978937497 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle