YRC Public Data Repository - Protein Structure Prediction

Protein:	RL25_COXBU
Organism:	Coxiella burnetii RSA 493
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL25_COXBU.

Description	E-value	Query Range	Subject Range
RL25_METFK - 50S ribosomal protein L25 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rplY...	239.0	[0..5]	[193..2]
RL25_CUPMC - 50S ribosomal protein L25 OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 /...	239.0	[0..6]	[210..1]
gi\|86282729, gi\|... - gi\|86358627\|ref\|YP_470519.1\| 50S ribosomal protein L25 [Rhizobium etli CFN 42], gi\|86282729\|gb\|ABC91...	238.0	[0..1]	[194..30]
RL25_RHILO - 50S ribosomal protein L25 OS=Rhizobium loti GN=rplY PE=3 SV=1 RL25_RHILO - 50S ribosomal protein L25 OS=Rhizobium loti (strain MAFF303099) GN=rplY PE=3 SV=1	238.0	[0..1]	[201..1]
gi\|116253213, gi... - gi\|116253213\|ref\|YP_769051.1\| 50S ribosomal protein L25/general stress protein Ctc [Rhizobium legumi...	238.0	[0..1]	[207..1]
RL25_CUPPJ - 50S ribosomal protein L25 OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=rplY PE=3 SV=...	236.0	[0..6]	[192..1]
gi\|83746829, gi\|... - gi\|83746829\|ref\|ZP_00943876.1\| LSU ribosomal protein L25P [Ralstonia solanacearum UW551], gi\|8372641... gi\|206593627, gi... - gi\|207742239\|ref\|YP_002258631.1\| 50s ribosomal protein l25 (general stress protein ctc) [Ralstonia s... gi\|207727835, gi... - gi\|207727835\|ref\|YP_002256229.1\| 50s ribosomal protein l25 [Ralstonia solanacearum MolK2], gi\|206591...	236.0	[0..6]	[197..1]
RL25_PSYAR - 50S ribosomal protein L25 - Psychrobacter arcticum RL25_PSYA2 - 50S ribosomal protein L25 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rplY PE=3 SV=1	235.0	[0..1]	[221..1]
RL25_HAHCH - 50S ribosomal protein L25 OS=Hahella chejuensis (strain KCTC 2396) GN=rplY PE=3 SV=1	235.0	[0..1]	[198..1]
RL25_BARBK - 50S ribosomal protein L25 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplY PE=3 SV=1	234.0	[0..3]	[210..2]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAESFELIA ELREFTGKSA ARRMRRFEDK VPGTVYGAGK APQSITLLQK DLLKALESES  60
   61 TFSSILTLKV GDKKQKVILK ALQRHHTKPK IVHIDFQRIK ASEKLIMNVP LHFLGEDDCP 120
  121 GVEAGGVVSH LQSEVEIRCL PADLPEYIEV DLSHLQLDES VHLSNLKLPA GVGLTSAVDE 180
  181 EHDSPIASVH MPRVSKADVE AEAAEAALAK EAATEAAEEE ETEKPASEAE ASGEAEQADT 240
  241 DKKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.522879
Match:	1nkwT
Description:	50S subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.1665304403994	bayes_pls_golite062009
structural molecule activity	8.59459543213994	bayes_pls_golite062009
5S rRNA binding	4.70443838393432	bayes_pls_golite062009
rRNA binding	4.2844525979436	bayes_pls_golite062009
RNA binding	4.0807034963688	bayes_pls_golite062009
nucleic acid binding	2.64595792001211	bayes_pls_golite062009
binding	2.0872529467434	bayes_pls_golite062009
protein binding	0.155133084870595	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: