YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29542063, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	256 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29542063, gi|....

Description	E-value	Query Range	Subject Range
gi\|154707259, gi... - gi\|94491846\|ref\|ZP_01299056.1\| hypothetical protein CburD_01001244 [Coxiella burnetii Dugway 7E9-12]...	263.0	[0..1]	[256..1]
gi\|91709345, gi\|... - gi\|91775358\|ref\|YP_545114.1\| signal peptidase I [Methylobacillus flagellatus KT], gi\|91775214\|ref\|YP...	255.0	[0..3]	[256..1]
gi\|53758236, gi\|... - gi\|53804475\|ref\|YP_113922.1\| signal peptidase I [Methylococcus capsulatus str. Bath], gi\|53758236\|gb...	252.0	[0..1]	[256..1]
gi\|27361079, gi\|... - gi\|27364933\|ref\|NP_760461.1\| Signal peptidase I [Vibrio vulnificus CMCP6], gi\|27361079\|gb\|AAO09988.1... gi\|37199766, gi\|... - gi\|37681016\|ref\|NP_935625.1\| signal peptidase I [Vibrio vulnificus YJ016], gi\|37199766\|dbj\|BAC95596....	251.0	[0..1]	[253..1]
gi\|78363364, gi\|... - gi\|78485078\|ref\|YP_391003.1\| peptidase S26A, signal peptidase I [Thiomicrospira crunogena XCL-2], gi...	249.0	[0..3]	[256..1]
gi\|153826891, gi... - gi\|153826891\|ref\|ZP_01979558.1\| signal peptidase I [Vibrio cholerae MZO-2], gi\|149739254\|gb\|EDM53516... gi\|153214494, gi... - gi\|153214494\|ref\|ZP_01949403.1\| signal peptidase I [Vibrio cholerae 1587], gi\|124115296\|gb\|EAY34116.... gi\|125621220, gi... - gi\|75818648\|ref\|ZP_00748784.1\| COG0681: Signal peptidase I [Vibrio cholerae V51], gi\|254226247\|ref\|Z... tr\|D7HEM9\|D7HEM9... - Signal peptidase I OS=Vibrio cholerae GN=lepB PE=3 SV=1, Signal peptidase I OS=Vibrio cholerae RC385... gi\|229338030, gi... - gi\|229524449\|ref\|ZP_04413854.1\| signal peptidase I [Vibrio cholerae bv. albensis VL426], gi\|22933803... gi\|229521289, gi... - gi\|229521289\|ref\|ZP_04410709.1\| signal peptidase I [Vibrio cholerae TM 11079-80], gi\|229341821\|gb\|EE... gi\|229335467, gi... - gi\|229527070\|ref\|ZP_04416465.1\| signal peptidase I [Vibrio cholerae 12129(1)], gi\|229335467\|gb\|EEO00...	248.0	[0..1]	[253..1]
gi\|81242142, gi\|... - gi\|82777994\|ref\|YP_404343.1\| lsignal peptidase I [Shigella dysenteriae Sd197], gi\|81242142\|gb\|ABB628...	248.0	[0..1]	[253..1]
gi\|117624789, gi... - gi\|117624789\|ref\|YP_853702.1\| lsignal peptidase I [Escherichia coli APEC O1], gi\|115513913\|gb\|ABJ019... gi\|189378631, gi... - gi\|189378631\|gb\|EDU97047.1\| signal peptidase I [Escherichia coli O157:H7 str. EC508], gi\|168798951\|r... gi\|168778546, gi... - gi\|189003483\|gb\|EDU72469.1\| signal peptidase I [Escherichia coli O157:H7 str. EC4076], gi\|168778546\|... gi\|195936715 - gi\|195936715\|ref\|ZP_03082097.1\| lsignal peptidase I [Escherichia coli O157:H7 str. EC4024] gi\|170517785, gi... - gi\|170680067\|ref\|YP_001744757.1\| signal peptidase I [Escherichia coli SMS-3-5], gi\|170517785\|gb\|ACB1... gi\|208733851, gi... - gi\|208812574\|ref\|ZP_03253903.1\| signal peptidase I [Escherichia coli O157:H7 str. EC4045], gi\|208733... gi\|208806754, gi... - gi\|208806754\|ref\|ZP_03249091.1\| signal peptidase I [Escherichia coli O157:H7 str. EC4206], gi\|208726... gi\|209400512, gi... - gi\|209400512\|ref\|YP_002272043.1\| signal peptidase I [Escherichia coli O157:H7 str. EC4115], gi\|20916... gi\|208822004, gi... - gi\|208822004\|ref\|ZP_03262324.1\| signal peptidase I [Escherichia coli O157:H7 str. EC4042], gi\|208742... gi\|110806513, gi... - gi\|110806513\|ref\|YP_690033.1\| lsignal peptidase I [Shigella flexneri 5 str. 8401], gi\|110616061\|gb\|A... gi\|188017088, gi... - gi\|188017088\|gb\|EDU55210.1\| signal peptidase I [Escherichia coli O157:H7 str. EC4113], gi\|168748361\|... gi\|168761190, gi... - gi\|189368439\|gb\|EDU86855.1\| signal peptidase I [Escherichia coli O157:H7 str. EC4501], gi\|168761190\|... gi\|91073469, gi\|... - gi\|91211895\|ref\|YP_541881.1\| lsignal peptidase I [Escherichia coli UTI89], gi\|91073469\|gb\|ABE08350.1... gi\|168757770, gi... - gi\|189355305\|gb\|EDU73724.1\| signal peptidase I [Escherichia coli O157:H7 str. EC4401], gi\|168757770\|... gi\|13362905, gi\|... - gi\|15832688\|ref\|NP_311461.1\| signal peptidase I [Escherichia coli O157:H7 str. Sakai], gi\|13362905\|d... gi\|168773505, gi... - gi\|187770721\|gb\|EDU34565.1\| signal peptidase I [Escherichia coli O157:H7 str. EC4196], gi\|168773505\|... gi\|110344322, gi... - gi\|110642730\|ref\|YP_670460.1\| signal peptidase I [Escherichia coli 536], gi\|110344322\|gb\|ABG70559.1\|... gi\|189362193, gi... - gi\|189362193\|gb\|EDU80612.1\| signal peptidase I [Escherichia coli O157:H7 str. EC4486], gi\|168768673\|... gi\|75237413 - gi\|75237413\|ref\|ZP_00721448.1\| COG0681: Signal peptidase I [Escherichia coli F11] gi\|193068340, gi... - gi\|75237686\|ref\|ZP_00721702.1\| COG0681: Signal peptidase I [Escherichia coli E110019], gi\|193068340\|... gi\|218706072, gi... - gi\|218706072\|ref\|YP_002413591.1\| signal peptidase I [Escherichia coli UMN026], gi\|218433169\|emb\|CAR1... gi\|193064078, gi... - gi\|75257992\|ref\|ZP_00729466.1\| COG0681: Signal peptidase I [Escherichia coli E22], gi\|193064078\|ref\|... gi\|82545020, gi\|... - gi\|82545020\|ref\|YP_408967.1\| lsignal peptidase I [Shigella boydii Sb227], gi\|81246431\|gb\|ABB67139.1\|... gi\|215487912, gi... - gi\|215487912\|ref\|YP_002330343.1\| signal peptidase I [Escherichia coli O127:H6 str. E2348/69], gi\|215... gi\|209920047, gi... - gi\|209920047\|ref\|YP_002294131.1\| signal peptidase I [Escherichia coli SE11], gi\|209913306\|dbj\|BAG783... gi\|218555149, gi... - gi\|218555149\|ref\|YP_002388062.1\| signal peptidase I [Escherichia coli IAI1], gi\|218361917\|emb\|CAQ995... gi\|194419637, gi... - gi\|83570804\|ref\|ZP_00922247.1\| COG0681: Signal peptidase I [Shigella dysenteriae 1012], gi\|194432108... gi\|217326961, gi... - gi\|217326961\|ref\|ZP_03443044.1\| signal peptidase I [Escherichia coli O157:H7 str. TW14588], gi\|21731... gi\|227835953, gi... - gi\|227887603\|ref\|ZP_04005408.1\| signal peptidase I [Escherichia coli 83972], gi\|227835953\|gb\|EEJ4641... gi\|83586780 - gi\|83586780\|ref\|ZP_00925411.1\| COG0681: Signal peptidase I [Escherichia coli 101-1] gi\|218690684, gi... - gi\|218690684\|ref\|YP_002398896.1\| signal peptidase I [Escherichia coli ED1a], gi\|218428248\|emb\|CAR091... gi\|237705078, gi... - gi\|237705078\|ref\|ZP_04535559.1\| signal peptidase I [Escherichia sp. 3_2_53FAA], gi\|226901444\|gb\|EEH8... gi\|187733350, gi... - gi\|75178163\|ref\|ZP_00698222.1\| COG0681: Signal peptidase I [Shigella boydii BS512], gi\|187733350\|ref... gi\|218366258, gi... - gi\|218559489\|ref\|YP_002392402.1\| signal peptidase I [Escherichia coli S88], gi\|218366258\|emb\|CAR0400... gi\|254289304, gi... - gi\|254289304\|ref\|YP_003055052.1\| leader peptidase (signal peptidase I) [Escherichia coli BL21(DE3)],... gi\|75187321, gi\|... - gi\|75187321\|ref\|ZP_00700588.1\| COG0681: Signal peptidase I [Escherichia coli E24377A], gi\|157156293\|... gi\|218701082, gi... - gi\|218701082\|ref\|YP_002408711.1\| signal peptidase I [Escherichia coli IAI39], gi\|218371068\|emb\|CAR18... gi\|253974444, gi... - gi\|254162543\|ref\|YP_003045651.1\| leader peptidase (signal peptidase I) [Escherichia coli B str. REL6... gi\|191167965, gi... - gi\|75228857\|ref\|ZP_00715458.1\| COG0681: Signal peptidase I [Escherichia coli B7A], gi\|191167965\|ref\|... gi\|218352928, gi... - gi\|218696196\|ref\|YP_002403863.1\| signal peptidase I [Escherichia coli 55989], gi\|218352928\|emb\|CAU98... gi\|254593919, gi... - gi\|254794519\|ref\|YP_003079356.1\| leader peptidase (signal peptidase I) [Escherichia coli O157:H7 str... gi\|24053011, gi\|... - gi\|24113910\|ref\|NP_708420.1\| lsignal peptidase I [Shigella flexneri 2a str. 301], gi\|24053011\|gb\|AAN... gi\|209762870, gi... - pir\|\|H85902 signal peptidase I (EC 3.4.21.89) [similarity] - Escherichia coli (strain O157:H7, subst... gi\|30042226, gi\|... - gi\|30063970\|ref\|NP_838141.1\| lsignal peptidase I [Shigella flexneri 2a str. 2457T], gi\|30042226\|gb\|A... gi\|26248933, gi\|... - gi\|26248933\|ref\|NP_754973.1\| lsignal peptidase I [Escherichia coli CFT073], gi\|26109339\|gb\|AAN81541.... gi\|15803095, gi\|... - gi\|15803095\|ref\|NP_289126.1\| lsignal peptidase I [Escherichia coli O157:H7 EDL933], gi\|12516986\|gb\|A... gi\|13362905, gi\|... - gi\|15832688\|ref\|NP_311461.1\| signal peptidase I [Escherichia coli O157:H7], gi\|13362905\|dbj\|BAB36857...	247.0	[0..1]	[253..1]
gi\|71907655, gi\|... - gi\|71907655\|ref\|YP_285242.1\| signal peptidase I [Dechloromonas aromatica RCB], gi\|71847276\|gb\|AAZ467...	247.0	[0..3]	[249..1]
gi\|194429296, gi... - gi\|75209492\|ref\|ZP_00709717.1\| COG0681: Signal peptidase I [Escherichia coli B171], gi\|194429296\|ref...	247.0	[0..1]	[253..1]

Back

Predicted Domain #1

Region A:
Residues: [1-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVDFAFYLT VAVILTGVIS FIDKLFLKKR RSPKAKASLS IEYAKTFFPV LLIVWVVRSF  60
   61 IIQPYHVPTG SLEPTVMPGD FIAVEQFAYG LRLPVLNKKI LPISEPKRGQ IALFRWPKDP 120
  121 KIVFVKRVIG LPGDHIVYKN KRLYINGQEQ KQNFLYKTND VSSWGYRRIV NVKEENLDGV 180
  181 KHKIYVQPAG GETEDYNLVV PPRHYFMMGD NRDNSDDSRQ WGFVPEKDLI GKAFGIWMSW 240
  241 DKLLNRIRWD RIGNAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.0
Match:	1kn9A
Description:	Type 1 signal peptidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidase activity	0.485843348899278	bayes_pls_golite062009
catalytic activity	0.415601732277814	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.237734983138449	bayes_pls_golite062009
hydrolase activity	0.188292586303013	bayes_pls_golite062009
protein binding	0.0579980138351139	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: