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View Structure Prediction Details

Protein: gi|29654768, gi|...
Organism: Coxiella burnetii RSA 493
Length: 179 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29654768, gi|....

Description E-value Query
Range
Subject
Range
gi|33634943, gi|... - gi|33863026|ref|NP_894586.1| thioredoxin peroxidase [Prochlorococcus marinus str. MIT 9313], gi|3363...
219.0 [0..2] [178..7]
gi|33865747, gi|... - gi|33865747|ref|NP_897306.1| thioredoxin peroxidase [Synechococcus sp. WH 8102], gi|33632917|emb|CAE...
219.0 [0..2] [178..7]
PRDX2_CRIGR - Peroxiredoxin-2 OS=Cricetulus griseus GN=PRDX2 PE=2 SV=3
219.0 [0..4] [178..8]
gi|78184723, gi|... - gi|78184723|ref|YP_377158.1| thioredoxin peroxidase [Synechococcus sp. CC9902], gi|78169017|gb|ABB26...
219.0 [0..2] [178..10]
gi|116070595, gi... - gi|116070595|ref|ZP_01467864.1| thioredoxin peroxidase [Synechococcus sp. BL107], gi|116066000|gb|EA...
218.0 [0..2] [178..7]
gi|62901916 - gi|62901916|gb|AAY18909.1| thioredoxin peroxidase 1-like [synthetic construct]
218.0 [0..3] [178..31]
gi|149037815, gi... - gi|34849738|gb|AAH58481.1| Peroxiredoxin 2 [Rattus norvegicus], gi|149037815|gb|EDL92175.1| rCG51106...
217.0 [0..4] [178..8]
gi|51980440 - gb|AAH82149.1| Unknown (protein for MGC:98395) [Xenopus laevis]
PRDX2_MOUSE - Peroxiredoxin-2 OS=Mus musculus GN=Prdx2 PE=1 SV=3
217.0 [0..3] [178..7]
gi|86167507, gi|... - gi|87124628|ref|ZP_01080476.1| thioredoxin peroxidase [Synechococcus sp. RS9917], gi|86167507|gb|EAQ...
217.0 [0..2] [178..7]

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Predicted Domain #1
Region A:
Residues: [1-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKIGEQFPS FSLKAVISND VNKAFTEINE KSYANKWLVL FFWPKDFTFV CPTEIAEFGR  60
   61 LNGEFADRDA QVLGASVDSE FVHLAWRREK EELSQLPFPM LSDIRRDLSQ RLGILNEKEG 120
  121 VAERATFIVD PNHIVRFVMV NDLNVGRNPQ EVLRVLDALQ TDELCPCNWQ QGEETIVVA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.39794
Match: 2bmxA
Description: Mycobacterium tuberculosis AhpC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
alkyl hydroperoxide reductase activity 4.29610283853788 bayes_pls_golite062009
antioxidant activity 3.8464796631544 bayes_pls_golite062009
peroxidase activity 3.43831566988273 bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor 3.43831566988273 bayes_pls_golite062009
selenium binding 2.92496040718744 bayes_pls_golite062009
glutathione peroxidase activity 2.56524997297011 bayes_pls_golite062009
transcription regulator activity 2.30799114442278 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 2.23310780102446 bayes_pls_golite062009
peroxiredoxin activity 2.12777217096121 bayes_pls_golite062009
thioredoxin peroxidase activity 1.96134566495756 bayes_pls_golite062009
protein disulfide oxidoreductase activity 1.47769936616412 bayes_pls_golite062009
disulfide oxidoreductase activity 1.32811008894503 bayes_pls_golite062009
transferase activity 1.26687471229876 bayes_pls_golite062009
binding 1.25802922431343 bayes_pls_golite062009
protein binding 1.18479617596618 bayes_pls_golite062009
molecular transducer activity 1.11518182894524 bayes_pls_golite062009
signal transducer activity 1.11518182894524 bayes_pls_golite062009
catalytic activity 0.672192331361968 bayes_pls_golite062009
peptide binding 0.374493676068876 bayes_pls_golite062009
0.359224524631956 bayes_pls_golite062009
NADH dehydrogenase activity 0.23291471505999 bayes_pls_golite062009
copper ion binding 0.178842772364502 bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity 0.16328723676608 bayes_pls_golite062009
NADH dehydrogenase (quinone) activity 0.0434052164026002 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle