YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29654606, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29654606, gi|....

Description	E-value	Query Range	Subject Range
gi\|119354616, gi... - gi\|67936950\|ref\|ZP_00529939.1\| Peptide methionine sulfoxide reductase:Protein of unknown function DU...	412.0	[0..7]	[284..55]
gi\|67938827, gi\|... - gi\|67938827\|ref\|ZP_00531346.1\| Peptide methionine sulfoxide reductase:Protein of unknown function DU...	406.0	[0..5]	[284..48]
gi\|68239739, gi\|... - gi\|68553388\|ref\|ZP_00592764.1\| Peptide methionine sulfoxide reductase:Protein of unknown function DU...	405.0	[0..5]	[284..61]
gi\|21674101, gi\|... - gi\|21674101\|ref\|NP_662166.1\| bifunctional methionine sulfoxide reductase B/A protein [Chlorobium tep...	403.0	[0..3]	[284..2]
gi\|145205711, gi... - gi\|71481702\|ref\|ZP_00661407.1\| Peptide methionine sulfoxide reductase:Protein of unknown function DU...	400.0	[0..7]	[284..31]
gi\|189346881, gi... - gi\|67917793\|ref\|ZP_00511397.1\| Peptide methionine sulfoxide reductase:Protein of unknown function DU...	400.0	[0..6]	[284..55]
gi\|120576568, gi... - gi\|153207437\|ref\|ZP_01946137.1\| methionine-S-sulfoxide reductase [Coxiella burnetii 'MSU Goat Q177']... gi\|165916347, gi... - gi\|165924205\|ref\|ZP_02220037.1\| methionine-S-sulfoxide reductase [Coxiella burnetii RSA 334], gi\|165... gi\|212012981, gi... - gi\|212218719\|ref\|YP_002305506.1\| peptide methionine sulfoxide reductase [Coxiella burnetii CbuK_Q154... gi\|154706004, gi... - gi\|94491577\|ref\|ZP_01298788.1\| hypothetical protein CburD_01001372 [Coxiella burnetii Dugway 7E9-12]...	396.0	[0..1]	[284..1]
gi\|110598056, gi... - gi\|110598056\|ref\|ZP_01386335.1\| peptide methionine sulfoxide reductase [Chlorobium ferrooxidans DSM ...	396.0	[0..6]	[284..5]
gi\|68242489, gi\|... - gi\|68550639\|ref\|ZP_00590083.1\| Peptide methionine sulfoxide reductase:Protein of unknown function DU...	395.0	[0..6]	[284..5]
gi\|78221446, gi\|... - gi\|78221446\|ref\|YP_383193.1\| bifunctional methionine sulfoxide reductase B/A protein [Geobacter meta...	391.0	[0..2]	[280..10]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKRSSLPPI VRHITCDQMT EPAFQGEYTD LKETGRYLCR QCGIALFRSQ DKFHSGCGWP  60
   61 SFDATIAGTI KRLPDPDGQR IEIRCERCGA HLGHVFEGEA LTPKNT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.30103
Match:	1l1dA
Description:	C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor	5.90194589149201	bayes_pls_golite062009
protein-methionine-R-oxide reductase activity	5.64196103816384	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	3.02342037380774	bayes_pls_golite062009
peptide-methionine-(S)-S-oxide reductase activity	1.80676476343543	bayes_pls_golite062009
binding	1.67290562818139	bayes_pls_golite062009
catalytic activity	0.566791077255496	bayes_pls_golite062009
nucleic acid binding	0.555078494441175	bayes_pls_golite062009
cation binding	0.491281675380108	bayes_pls_golite062009
metal ion binding	0.491281675380108	bayes_pls_golite062009
ion binding	0.484162333942196	bayes_pls_golite062009
zinc ion binding	0.32394167601451	bayes_pls_golite062009
DNA binding	0.215568693193579	bayes_pls_golite062009
transcription regulator activity	0.183261590647643	bayes_pls_golite062009
protein binding	0.0755837372617499	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [107-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RYCVNSLSLD FVTDSQIRDT EEAIFAGGCF WGVEYYFKRL PGVVKTEVGY TGGHKNNPTY  60
   61 KEVCSRTTGH VEAIRVLYDP QQINYEKILH YFFEIHDPTQ TDGQGPDLGD QYHSVIFYYD 120
  121 NQQKRMAEMA IKVLTEKGYR IATRLAPVSI FWRAEDYHQD YYQKTGKQPY CHHYVKRF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.0
Match:	2gt3A
Description:	No description for 2gt3A was found.

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor	7.33214277590189	bayes_pls_golite062009
peptide-methionine-(S)-S-oxide reductase activity	7.05871760837663	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	4.45221508174489	bayes_pls_golite062009
catalytic activity	2.02168745464921	bayes_pls_golite062009
binding	1.21670366786992	bayes_pls_golite062009
protein binding	0.0950083680136139	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: