YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29541839, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29541839, gi|....

Description	E-value	Query Range	Subject Range
gi\|17430671 - gi\|17430671\|emb\|CAD17354.1\| putative acyl-coa hydrolase or thioesterase ; protein [Ralstonia solanac... gi\|17548424 - gi\|17548424\|ref\|NP_521764.1\| acyl-CoA thioester hydrolase-related protein [Ralstonia solanacearum GM...	168.0	[0..8]	[161..4]
gi\|71848752, gi\|... - gi\|71909131\|ref\|YP_286718.1\| thioesterase superfamily protein [Dechloromonas aromatica RCB], gi\|7184...	165.0	[0..8]	[161..4]
gi\|23100499, gi\|... - gi\|23100499\|ref\|NP_693966.1\| acyl-CoA thioester hydrolase [Oceanobacillus iheyensis HTE831], gi\|2277...	164.0	[0..1]	[160..1]
gi\|115588890, gi... - gi\|116053669\|ref\|YP_793996.1\| hypothetical protein PA14_72810 [Pseudomonas aeruginosa UCBPP-PA14], g... gi\|194554054, gi... - gi\|254243069\|ref\|ZP_04936391.1\| conserved hypothetical protein [Pseudomonas aeruginosa 2192], gi\|194... gi\|126169732, gi... - gi\|254237801\|ref\|ZP_04931124.1\| conserved hypothetical protein [Pseudomonas aeruginosa C3719], gi\|19... gi\|9951856, gi\|1... - gi\|9951856\|gb\|AAG08904.1\|AE004964_7 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], gi... gi\|218774851, gi... - gi\|218894622\|ref\|YP_002443492.1\| putative acyl-CoA thioester hydrolase [Pseudomonas aeruginosa LESB5... gi\|11348349 - pir\|\|F82956 conserved hypothetical protein PA5519 [imported] - Pseudomonas aeruginosa (strain PAO1)	163.0	[0..11]	[161..35]
gi\|67155639, gi\|... - gi\|67155639\|ref\|ZP_00417266.1\| Thioesterase superfamily [Azotobacter vinelandii AvOP], gi\|67086583\|g... gi\|67155639, gi\|... - gi\|67155639\|ref\|ZP_00417266.1\| Thioesterase superfamily [Azotobacter vinelandii AvOP], ref\|ZP_000907...	163.0	[0..11]	[162..7]
gi\|110335861, gi... - gi\|121595165\|ref\|YP_987061.1\| thioesterase superfamily protein [Acidovorax sp. JS42], gi\|120607245\|g... gi\|222111506, gi... - gi\|222111506\|ref\|YP_002553770.1\| thioesterase superfamily protein [Diaphorobacter sp. TPSY], gi\|2217...	163.0	[0..8]	[161..4]
gi\|84318062 - gi\|84318062\|ref\|ZP_00966491.1\| COG1607: Acyl-CoA hydrolase [Pseudomonas aeruginosa C3719]	161.0	[0..11]	[161..7]
gi\|7226722, gi\|1... - gi\|7226722\|gb\|AAF41838.1\| acyl CoA thioester hydrolase family protein [Neisseria meningitidis MC58],... gi\|11282840 - pir\|\|G81079 acyl CoA thioester hydrolase family protein NMB1482 [imported] - Neisseria meningitidis ...	160.0	[0..1]	[152..1]
gi\|72121210, gi\|... - gi\|73537873\|ref\|YP_298240.1\| thioesterase superfamily protein [Ralstonia eutropha JMP134], gi\|721212...	160.0	[0..8]	[161..4]
gi\|254493504, gi... - gi\|254493504\|ref\|ZP_05106675.1\| acyl-CoA hydrolase [Neisseria gonorrhoeae 1291], gi\|226512544\|gb\|EEH... gi\|240127944 - gi\|240127944\|ref\|ZP_04740605.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae SK-93-1035] gi\|193933584, gi... - gi\|194098294\|ref\|YP_002001352.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae NCCP11945], gi\|1... gi\|240014368 - gi\|240014368\|ref\|ZP_04721281.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae DGI18] gi\|239998714 - gi\|239998714\|ref\|ZP_04718638.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae 35/02] gi\|240115389 - gi\|240115389\|ref\|ZP_04729451.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae PID18] gi\|59718321, gi\|... - gi\|59801426\|ref\|YP_208138.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae FA 1090], gi\|5971832... gi\|240112644 - gi\|240112644\|ref\|ZP_04727134.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae MS11] gi\|240080998 - gi\|240080998\|ref\|ZP_04725541.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae FA19] gi\|240016801 - gi\|240016801\|ref\|ZP_04723341.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae FA6140] gi\|240125492 - gi\|240125492\|ref\|ZP_04738378.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae SK-92-679] gi\|240123241 - gi\|240123241\|ref\|ZP_04736197.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae PID332] gi\|240121930 - gi\|240121930\|ref\|ZP_04734892.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae PID24-1] gi\|240117686 - gi\|240117686\|ref\|ZP_04731748.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae PID1]	159.0	[0..1]	[152..1]

Back

Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPKRVSESV IHDQIYKIFP NDLNSNDTVF GGLVMAMLDR TALVVAERHS GHTCVTASVD  60
   61 ALHFLAPAGR GDVLLIRASI NRAWRTSMEI GLKVLAENPK TRAVTHIISA YFTFVAVDEN 120
  121 RKPTEVPSVI PETDIEKRRY EEAEYRRERR KIDAQERRRR RGL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.30103
Match:	1vpmA
Description:	Crystal structure of Acyl-CoA hydrolase (NP_241664.1) from Bacillus halodurans at 1.66 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
CoA hydrolase activity	1.75530090056705	bayes_pls_golite062009
catalytic activity	1.11649534052993	bayes_pls_golite062009
thiolester hydrolase activity	0.65794221902015	bayes_pls_golite062009
acyl-CoA thioesterase activity	0.24094527143225	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: