YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29541615, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29541615, gi|....

Description	E-value	Query Range	Subject Range
gi\|71657945, gi\|... - gi\|71657945\|ref\|YP_272021.1\| cytochrome c oxidase subunit III [Oreochromis mossambicus], gi\|51011729...	257.0	[0..1]	[198..62]
gi\|45387966, gi\|... - gi\|45387966\|ref\|NP_990956.1\| cytochrome c oxidase subunit III [Acipenser stellatus], gi\|44843596\|emb...	256.0	[0..1]	[196..62]
gi\|51235011, gi\|... - gi\|51235011\|ref\|YP_063501.1\| cytochrome c oxidase subunit III [Carassius auratus x Cyprinus carpio],... gi\|55338285, gi\|... - gi\|55338285\|ref\|YP_133899.1\| cytochrome c oxidase subunit III [Carassius auratus x Cyprinus carpio x... COX3_CYPCA - Cytochrome c oxidase subunit 3 OS=Cyprinus carpio GN=mt-co3 PE=2 SV=2 gi\|56798135, gi\|... - gi\|56912174\|ref\|YP_173342.1\| cytochrome c oxidase subunit III [Carassius auratus auratus], gi\|567981... gi\|254033652, gi... - gi\|254033652\|ref\|YP_003058371.1\| cytochrome c oxidase subunit III [natural gynogenetic Carassius aur...	256.0	[0..1]	[196..62]
gi\|38304806, gi\|... - gi\|38638382\|ref\|NP_943623.1\| cytochrome c oxidase subunit III [Huso huso], gi\|38304806\|gb\|AAR16148.1...	256.0	[0..1]	[196..62]
gi\|44887482, gi\|... - gi\|71658043\|ref\|YP_271995.1\| cytochrome c oxidase subunit III [Cobitis sinensis], gi\|44887482\|gb\|AAS...	256.0	[0..1]	[196..62]
gi\|25006075, gi\|... - gi\|25057836\|ref\|NP_740068.1\| cytochrome c oxidase subunit III [Caranx melampygus], gi\|25006075\|dbj\|B...	256.0	[0..1]	[196..62]
gi\|38603501, gi\|... - gi\|58372104\|ref\|YP_194930.1\| cytochrome c oxidase subunit III [Trachurus trachurus], gi\|38603501\|dbj...	255.0	[0..1]	[196..62]
gi\|88759265, gi\|... - gi\|89257267\|ref\|YP_514716.1\| cytochrome c oxidase subunit III [Denticeps clupeoides], gi\|88759265\|db...	255.0	[0..1]	[196..62]
gi\|16357381, gi\|... - gi\|16357381\|ref\|NP_443690.1\| cytochrome c oxidase subunit III [Helicolenus hilgendorfi], gi\|16267291...	255.0	[0..1]	[196..62]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVDTAAAEH HHNADATDVF GFWLYIMTDC ILFASLFATF LVLHHPGAVG PPLKPLIDLP  60
   61 YVLVETFFLL ASNFTFCLAI FGINKNKLPA VIFWLILTFI LGAGFVVMEV MEFIHLNAEG 120
  121 YSWHVSGAAS AFFTLVGTHG FHVTMGLLWI LIMIIQLPIL KINKNTARRM VYLGLFWNFL 180
  181 DIVWIFLFTI VYLMGAVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.69897
Match:	1fftC
Description:	Cytochrome O ubiquinol oxidase, subunit III
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrogen ion transmembrane transporter activity	8.59128089167986	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	6.88271413040221	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	6.58538119091174	bayes_pls_golite062009
cation transmembrane transporter activity	6.45649160474673	bayes_pls_golite062009
ion transmembrane transporter activity	6.3484316712663	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	5.97318568679269	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.91828857375608	bayes_pls_golite062009
heme-copper terminal oxidase activity	5.83100344847255	bayes_pls_golite062009
cytochrome o ubiquinol oxidase activity	5.57652284753906	bayes_pls_golite062009
cytochrome-c oxidase activity	4.7931528448557	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	4.7931528448557	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	4.7931528448557	bayes_pls_golite062009
transporter activity	4.25438846058626	bayes_pls_golite062009
transmembrane transporter activity	4.17164895597342	bayes_pls_golite062009
substrate-specific transporter activity	4.04860232618097	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	3.26454642730214	bayes_pls_golite062009
oxidoreductase activity	2.87095049256457	bayes_pls_golite062009
catalytic activity	1.98531969314183	bayes_pls_golite062009
active transmembrane transporter activity	0.371119126778133	bayes_pls_golite062009
primary active transmembrane transporter activity	0.361032852452888	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: