YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29541093, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29541093, gi|....

Description	E-value	Query Range	Subject Range
gi\|91084329 - gi\|91084329\|ref\|XP_972528.1\| PREDICTED: similar to Serine/threonine-protein phosphatase alpha-1 isof...	198.0	[0..1]	[221..8536]
gi\|109105418 - gi\|109105418\|ref\|XP_001117941.1\| PREDICTED: similar to protein phosphatase 1, catalytic subunit, alp...	193.0	[0..1]	[221..148]
gi\|114646946 - gi\|114646946\|ref\|XP_001144148.1\| PREDICTED: protein phosphatase 1, catalytic subunit, gamma isoform ...	193.0	[0..1]	[221..83]
gi\|47217551 - gi\|47217551\|emb\|CAG02478.1\| unnamed protein product [Tetraodon nigroviridis]	192.0	[0..1]	[221..51]
gi\|157749933 - gi\|157749933\|ref\|XP_001678680.1\| Hypothetical protein CBG00598 [Caenorhabditis briggsae AF16] CRE12319, FL81_2... - RP42462 WBGene00066428 locus:Cre-gsp-2 status:Partially_confirmed, null GLC7B_CAEBR - Serine/threonine-protein phosphatase PP1-beta OS=Caenorhabditis briggsae GN=gsp-2 PE=3 SV=1	192.0	[0..1]	[221..50]
gsp-2 - status:Confirmed UniProt:P48727 protein_id:AAK18957.1	191.0	[0..1]	[221..50]
gi\|2117989, gi\|2... - gi\|220873\|dbj\|BAA14197.1\| protein phosphatase 1, catalytic subunit [Rattus norvegicus], gi\|2117989\|p...	191.0	[0..1]	[221..51]
gi\|74177455 - gi\|74177455\|dbj\|BAE34608.1\| unnamed protein product [Mus musculus]	191.0	[0..1]	[221..50]

Back

Predicted Domain #1

Region A:
Residues: [1-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVPTTVRVY VIGDVHGCAD LLTRMLKNIE KDAQLHPQSR HILVTLGDYI DRGPHSRKVI  60
   61 ETLIHLPLNG FETRYLKGNH EDMFLNFLRD PEEGLLWLSN GGWATLVSYG FKVDDLPRET 120
  121 SDLPLARDRT LQLLPPEHLT FFKSLKLHYQ LGDYFFVHAG VCPGIPLDKQ TEEDLLWIRS 180
  181 EFLHSKTDFG KIVVHGHTIV KEPEIHNNRI ALDTGAFHTG NLSCLVLSGG ERYFL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.39794
Match:	1fjmA
Description:	Protein phosphatase-1 (PP-1)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphoprotein phosphatase activity	11.6417995308386	bayes_pls_golite062009
protein serine/threonine phosphatase activity	10.6440947462013	bayes_pls_golite062009
phosphatase activity	10.5525832502704	bayes_pls_golite062009
phosphoric ester hydrolase activity	10.3702645338723	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	9.02791306892273	bayes_pls_golite062009
calcium-dependent protein serine/threonine phosphatase activity	6.04386346716682	bayes_pls_golite062009
hydrolase activity	4.67522104695122	bayes_pls_golite062009
myosin phosphatase activity	4.06695833139606	bayes_pls_golite062009
catalytic activity	1.39852585255405	bayes_pls_golite062009
protein binding	0.420944017984634	bayes_pls_golite062009
binding	0.212656263179037	bayes_pls_golite062009
protein kinase activity	0.0890836633759679	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.0524929216559791	bayes_pls_golite062009
kinase activity	0.0430043477913548	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	2.39246790349923E-4	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: