YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29653764, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	281 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29653764, gi|....

Description	E-value	Query Range	Subject Range
ILVE_SALTY - Branched-chain-amino-acid aminotransferase OS=Salmonella typhimurium GN=ilvE PE=1 SV=2 ILVE_SALTI - Branched-chain-amino-acid aminotransferase OS=Salmonella typhi GN=ilvE PE=3 SV=2 ILVE_SALTY - Branched-chain-amino-acid aminotransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7... gi\|213981032 - gi\|213981032\|ref\|ZP_03408291.1\| branched-chain amino acid aminotransferase [Salmonella enterica subs... gi\|213864754 - gi\|213864754\|ref\|ZP_03386873.1\| branched-chain amino acid aminotransferase [Salmonella enterica subs... ILVE_SALTI - Branched-chain-amino-acid aminotransferase OS=Salmonella typhi GN=ilvE PE=3 SV=2 gi\|213646697 - gi\|213646697\|ref\|ZP_03376750.1\| branched-chain amino acid aminotransferase [Salmonella enterica subs... gi\|29143717, gi\|... - gi\|29143717\|ref\|NP_807059.1\| branched-chain amino acid aminotransferase [Salmonella enterica subsp. ... gi\|16762228 - gi\|16762228\|ref\|NP_457845.1\| branched-chain amino acid aminotransferase [Salmonella enterica subsp. ... gi\|167553329, gi... - gi\|205322227\|gb\|EDZ10066.1\| branched-chain amino acid aminotransferase [Salmonella enterica subsp. e... ILVE_SALTY - Branched-chain-amino-acid aminotransferase OS=Salmonella typhimurium GN=ilvE PE=1 SV=2 gi\|161617020, gi... - gi\|161617020\|ref\|YP_001590985.1\| branched-chain amino acid aminotransferase [Salmonella enterica sub... lcl\|NC_016856.1_... - [gene=ilvE] [protein=branched-chain amino acid aminotransferase] [protein_id=YP_005240165.1] [locati... gi\|213425638 - gi\|213425638\|ref\|ZP_03358388.1\| branched-chain amino acid aminotransferase [Salmonella enterica subs... gi\|194713775, gi... - gi\|194738273\|ref\|YP_002116837.1\| branched-chain amino acid aminotransferase [Salmonella enterica sub... gi\|168238357, gi... - gi\|197288739\|gb\|EDY28114.1\| branched-chain amino acid aminotransferase [Salmonella enterica subsp. e... gi\|167994598, gi... - gi\|205327552\|gb\|EDZ14316.1\| branched-chain amino acid aminotransferase [Salmonella enterica subsp. e...	328.0	[0..2]	[281..8]
gi\|56415762, gi\|... - gi\|56415762\|ref\|YP_152837.1\| branched-chain amino acid aminotransferase [Salmonella enterica subsp. ... gi\|197364691, gi... - gi\|197364691\|ref\|YP_002144328.1\| branched-chain amino acid aminotransferase [Salmonella enterica sub...	327.0	[0..2]	[281..8]
gi\|71848528, gi\|... - gi\|71908907\|ref\|YP_286494.1\| branched-chain amino acid aminotransferase [Dechloromonas aromatica RCB...	327.0	[0..3]	[279..10]
gi\|19888339, gi\|... - gi\|20095063\|ref\|NP_614910.1\| branched-chain amino acid aminotransferase [Methanopyrus kandleri AV19]...	327.0	[0..2]	[279..7]
gi\|224470253, gi... - gi\|224585725\|ref\|YP_002639524.1\| branched-chain amino acid aminotransferase [Salmonella enterica sub... gi\|238912911 - gi\|238912911\|ref\|ZP_04656748.1\| branched-chain amino acid aminotransferase [Salmonella enterica subs... gi\|62182378, gi\|... - gi\|62182378\|ref\|YP_218795.1\| branched-chain amino acid aminotransferase [Salmonella enterica subsp. ...	326.0	[0..2]	[281..8]
gi\|30064933, gi\|... - gi\|30064933\|ref\|NP_839104.1\| branched-chain amino acid aminotransferase [Shigella flexneri 2a str. 2... gi\|229774929 - gi\|229774929\|ref\|YP_691058.2\| branched-chain amino acid aminotransferase [Shigella flexneri 5 str. 8... gi\|24115065, gi\|... - gi\|24115065\|ref\|NP_709575.1\| branched-chain amino acid aminotransferase [Shigella flexneri 2a str. 3...	326.0	[0..2]	[281..8]
gi\|96710 - gi\|96710\|pir\|\|A34082 branched-chain-amino-acid transaminase (EC 2.6.1.42) - Salmonella typhimurium	326.0	[0..2]	[281..7]
gi\|353522 - gi\|353522\|prf\|\|1104250A aminotransferase,branched chain AA	326.0	[0..2]	[281..14]
gi\|110644100, gi... - gi\|110644100\|ref\|YP_671830.1\| branched-chain amino acid aminotransferase [Escherichia coli 536], gi\|... gi\|75236526, gi\|... - gi\|75236526\|ref\|ZP_00720616.1\| COG0115: Branched-chain amino acid aminotransferase/4-amino-4-deoxych... gi\|91213292, gi\|... - gi\|91213292\|ref\|YP_543278.1\| branched-chain amino acid aminotransferase [Escherichia coli UTI89], gi... gi\|117626033, gi... - gi\|117626033\|ref\|YP_859356.1\| branched-chain amino acid aminotransferase [Escherichia coli APEC O1],... gi\|237702781, gi... - gi\|237702781\|ref\|ZP_04533262.1\| branched-chain amino acid aminotransferase [Escherichia sp. 3_2_53FA... gi\|218692050, gi... - gi\|218692050\|ref\|YP_002400262.1\| branched-chain amino acid aminotransferase [Escherichia coli ED1a],... gi\|218367606, gi... - gi\|218560837\|ref\|YP_002393750.1\| branched-chain amino acid aminotransferase [Escherichia coli S88], ...	325.0	[0..2]	[281..8]
ILVE_METJA - Putative branched-chain-amino-acid aminotransferase OS=Methanocaldococcus jannaschii (strain ATCC 43... ILVE_METJA - Putative branched-chain-amino-acid aminotransferase OS=Methanocaldococcus jannaschii GN=ilvE PE=3 SV...	325.0	[0..1]	[278..1]

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Predicted Domain #1

Region A:
Residues: [1-281]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIIFNKKIL SADTPIIYSN DRGFLFGDGL FETIKAEKNE LLFFAEHYNR LATSAKKLFI  60
   61 PLNFSLLELK TQCESLLEIN KLDEAAVRIT LTRGSSERGI AIESAVSPNL LITTIPYKKQ 120
  121 ADIYPTLCIT AIRRNEYSPL SQLKTLNFLE PILTRQQAIK NGSAEGVMLN TKGAVTETSV 180
  181 GNLFAVIHQK IFTPKIEDGL LPGIVRQIVI DIATKTDIPI KEKTLSPEDL LEADEIFHTN 240
  241 SLIEIQSFAK INERPLATGE QALLTRKILE TYEWYKNKRK K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.154902
Match:	1i1kA
Description:	Branched-chain aminoacid aminotransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
D-alanine:2-oxoglutarate aminotransferase activity	5.92270586163256	bayes_pls_golite062009
branched-chain-amino-acid transaminase activity	4.40524391258229	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	2.8158800446404	bayes_pls_golite062009
transaminase activity	2.8068647476058	bayes_pls_golite062009
catalytic activity	2.79277628243817	bayes_pls_golite062009
4-amino-4-deoxychorismate lyase activity	2.07400020867227	bayes_pls_golite062009
L-alanine:2-oxoglutarate aminotransferase activity	1.88117354921159	bayes_pls_golite062009
alanine-oxo-acid transaminase activity	1.88117354921159	bayes_pls_golite062009
transferase activity	1.36772068349993	bayes_pls_golite062009
oxo-acid-lyase activity	0.20929492402161	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: