YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29653497, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29653497, gi|....

Description	E-value	Query Range	Subject Range
gi\|94314524, gi\|... - gi\|94314524\|ref\|YP_587733.1\| carbonic anhydrase [Ralstonia metallidurans CH34], gi\|93358376\|gb\|ABF12...	241.0	[0..6]	[204..2]
gi\|77456310, gi\|... - gi\|77456310\|ref\|YP_345815.1\| carbonic anhydrase [Pseudomonas fluorescens Pf0-1], gi\|77380313\|gb\|ABA7...	241.0	[0..2]	[204..23]
gi\|94416100 - gi\|94416100\|ref\|ZP_01295931.1\| hypothetical protein PaerP_01002180 [Pseudomonas aeruginosa PA7]	238.0	[0..2]	[204..15]
gi\|49082084 - gi\|49082084\|gb\|AAT50442.1\| PA0102 [synthetic construct]	238.0	[0..2]	[204..19]
gi\|9945929, gi\|1... - gi\|9945929\|gb\|AAG03492.1\|AE004449_1 probable carbonic anhydrase [Pseudomonas aeruginosa PAO1], gi\|15... gi\|11351140 - pir\|\|C83631 probable carbonic anhydrase PA0102 [imported] - Pseudomonas aeruginosa (strain PAO1)	237.0	[0..2]	[204..19]
gi\|126169587, gi... - gi\|254237656\|ref\|ZP_04930979.1\| hypothetical protein PACG_03741 [Pseudomonas aeruginosa C3719], gi\|1... gi\|115589044, gi... - gi\|116053823\|ref\|YP_788260.1\| carbonic anhydrase [Pseudomonas aeruginosa UCBPP-PA14], gi\|115589044\|g... gi\|254243209, gi... - gi\|254243209\|ref\|ZP_04936531.1\| hypothetical protein PA2G_04014 [Pseudomonas aeruginosa 2192], gi\|19... gi\|218769070, gi... - gi\|218888847\|ref\|YP_002437711.1\| putative carbonic anhydrase [Pseudomonas aeruginosa LESB58], gi\|218...	237.0	[0..2]	[204..19]
gi\|75211131, gi\|... - gi\|75211131\|ref\|ZP_00711238.1\| COG0288: Carbonic anhydrase [Escherichia coli B171], gi\|194427575\|ref...	237.0	[0..6]	[205..2]
gi\|67155659 - gi\|67155659\|ref\|ZP_00417286.1\| Carbonate dehydratase [Azotobacter vinelandii AvOP] gi\|67086603, gi\|... - gi\|67155659\|ref\|ZP_00417286.1\| Carbonate dehydratase [Azotobacter vinelandii AvOP], gi\|67086603\|gb\|E...	236.0	[0..2]	[202..120]
gi\|68347870, gi\|... - gi\|70733571\|ref\|YP_257210.1\| carbonic anhydrase [Pseudomonas fluorescens Pf-5], gi\|68347870\|gb\|AAY95...	236.0	[0..2]	[204..16]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKSFEKIIR GYHDFRKKYA TGNNSSMQSL AYHGQQPEIM IVACCDSRVD PALILQCDPG  60
   61 DLFVVRNVAN IVPPYEADES HHGTSAALEF GICYLNVKHL IILGHSQCGG INALLNSENL 120
  121 KQNDFITRWV SLIKTNSSMI QDANQFSKEA LTHSYQNCLT FPWIKERIQQ KKLSIHLWFF 180
  181 DIKEGEIFAY SFENKKYQQL ISNAQN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.0
Match:	1ekjA
Description:	beta-carbonic anhydrase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
carbonate dehydratase activity	2.96380803089124	bayes_pls_golite062009
catalytic activity	1.85658156053797	bayes_pls_golite062009
carbon-oxygen lyase activity	1.691366175135	bayes_pls_golite062009
hydro-lyase activity	1.65497918079842	bayes_pls_golite062009
lyase activity	1.62374861994341	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: