YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29653381, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29653381, gi|....

Description	E-value	Query Range	Subject Range
gi\|56421034, gi\|... - gi\|56421034\|ref\|YP_148352.1\| deoxyribose-phosphate aldolase [Geobacillus kaustophilus HTA426], gi\|56...	303.0	[0..9]	[219..55]
DEOC_PYRKO - Probable deoxyribose-phosphate aldolase OS=Pyrococcus kodakaraensis GN=deoC PE=3 SV=1 DEOC_THEKO - Deoxyribose-phosphate aldolase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)...	301.0	[0..1]	[219..1]
gi\|90581531, gi\|... - gi\|90581531\|ref\|ZP_01237324.1\| deoxyribose-phosphate aldolase [Vibrio angustum S14], gi\|90437293\|gb\|...	293.0	[0..6]	[241..8]
DEOC_THETN - Deoxyribose-phosphate aldolase OS=Thermoanaerobacter tengcongensis GN=deoC PE=3 SV=1 DEOC_CALS4 - Deoxyribose-phosphate aldolase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 152...	293.0	[0..9]	[219..11]
gi\|89051696, gi\|... - gi\|89072592\|ref\|ZP_01159164.1\| deoxyribose-phosphate aldolase [Photobacterium sp. SKA34], gi\|8905169...	293.0	[0..6]	[241..8]
gi\|83368416, gi\|... - gi\|83368416\|ref\|ZP_00913279.1\| Deoxyribose-phosphate aldolase [Rhodobacter sphaeroides ATCC 17025], ...	291.0	[0..8]	[241..212]
DEOC_CARHZ - Deoxyribose-phosphate aldolase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 ...	291.0	[0..8]	[219..6]
gi\|89084799, gi\|... - gi\|89100456\|ref\|ZP_01173318.1\| deoxyribose phosphate aldolase [Bacillus sp. NRRL B-14911], gi\|890847...	288.0	[0..3]	[219..8]
DEOC_GEOKA - Deoxyribose-phosphate aldolase OS=Geobacillus kaustophilus (strain HTA426) GN=deoC PE=3 SV=2 DEOC_GEOKA - Deoxyribose-phosphate aldolase OS=Geobacillus kaustophilus GN=deoC PE=3 SV=2	288.0	[0..9]	[219..5]
gi\|114643812 - gi\|114643812\|ref\|XP_520770.2\| PREDICTED: 2-deoxyribose-5-phosphate aldolase homolog [Pan troglodytes...	286.0	[0..8]	[241..70]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSDFAKTLI PLIDLTRLNE DDTPETIEQL CHQAKTPYGP VAAVCIYPQF VKQARFLLAG  60
   61 VPIKVATVAN FPKGDQSRVD CIQSIKQSLD EGADEIDVVM PYKSYLEGNT KEVRAFLEAC 120
  121 RGTCGPQAIL KVILETGALI KRDIIFDATK LAIHAGADFI KTSTGKLPSG ATIEAAEIIL 180
  181 EAIQNHANKR VGLKISGGIQ TFEQAVPYIQ LIKDKMGAAW ITPQTIRFGA SRLLADIMQC 240
  241 L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.09691
Match:	1jclA
Description:	Deoxyribose-phosphate aldolase DeoC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.67031204377352	bayes_pls_golite062009
deoxyribose-phosphate aldolase activity	2.42732299324236	bayes_pls_golite062009
kinase activity	1.94076427145239	bayes_pls_golite062009
fructose-bisphosphate aldolase activity	1.57588823292155	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	1.53236719840557	bayes_pls_golite062009
transaldolase activity	1.20024248197006	bayes_pls_golite062009
transferase activity	0.464721888799972	bayes_pls_golite062009
aldehyde-lyase activity	0.351872954170322	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: