YRC Public Data Repository - Protein Structure Prediction

Protein:	ANTR2_ARATH
Organism:	Arabidopsis thaliana
Length:	541 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ANTR2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|92892758 - gi\|92892758\|gb\|ABE91392.1\| Major facilitator superfamily MFS_1 [Medicago truncatula]	305.0	[0..1]	[541..1]
gi\|68389434 - gi\|68389434\|ref\|XP_691920.1\| PREDICTED: similar to solute carrier family 17 (sodium-dependent inorga...	271.0	[0..85]	[538..97]
gi\|218202668 - gi\|218202668\|gb\|EEC85095.1\| hypothetical protein OsI_32467 [Oryza sativa Indica Group] PHT44_ORYSJ - Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1	269.0	[0..85]	[541..136]
gi\|91089229 - gi\|91089229\|ref\|XP_968302.1\| PREDICTED: similar to CG5304-PA [Tribolium castaneum]	259.0	[0..121]	[537..569]
VGLU2_RAT - Vesicular glutamate transporter 2 OS=Rattus norvegicus GN=Slc17a6 PE=1 SV=1	256.0	[0..91]	[538..31]
gi\|188219544, gi... - gi\|23468366\|gb\|AAH38375.1\| Solute carrier family 17 (sodium-dependent inorganic phosphate cotranspor...	255.0	[0..91]	[538..31]
VGLU2_BOVIN - Vesicular glutamate transporter 2 OS=Bos taurus GN=SLC17A6 PE=2 SV=1	255.0	[0..91]	[538..31]
gi\|109098417 - gi\|109098417\|ref\|XP_001089949.1\| PREDICTED: similar to solute carrier family 17 (sodium-dependent in...	255.0	[0..78]	[538..22]
gi\|114646499 - gi\|114646499\|ref\|XP_509298.2\| PREDICTED: solute carrier family 17 (sodium-dependent inorganic phosph...	255.0	[0..78]	[538..22]
SLC17A8 - solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	255.0	[0..78]	[538..22]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALGGLISNR NFGSFIGSGN GCQRLGKSGA EVSKLFPNAL LCRNHQPLQA SLHHESGHMR  60
   61 RSFGCFLQPR MDSVIRFRNS IKINRSRAYY KSEESDITEG VVPSAD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.584	a.81.1	N-terminal domain of DnaB helicase
View	Download	0.584	a.81.1	N-terminal domain of DnaB helicase
View	Download	0.499	a.70.1	N-terminal domain of the delta subunit of the F1F0-ATP synthase
View	Download	0.458	b.1.2	Fibronectin type III
View	Download	0.402	a.29.16	Description not found.
View	Download	0.397	d.95.2	Homing endonucleases
View	Download	0.394	d.95.2	Homing endonucleases
View	Download	0.394	d.95.2	Homing endonucleases
View	Download	0.355	a.138.1	Multiheme cytochromes
View	Download	0.355	a.138.1	Multiheme cytochromes

Predicted Domain #2

Region A:
Residues: [107-541]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSAEAILVEG NLQNASPWWQ QFPRRWVIVL LCFSSFLLCN MDRVNMSIAI LPMSQEYNWS  60
   61 SATVGLIQSS FFWGYLLTQI LGGIWADKFG GKVVLGFGVV WWSFATIMTP IAARLGLPFL 120
  121 LVVRAFMGIG EGVAMPAMNN MLSKWIPVSE RSRSLALVYS GMYLGSVTGL AFSPMLITKF 180
  181 GWPSVFYSFG SLGSIWFLLW LKFAYSSPKD DPDLSEEEKK VILGGSKPRE PVTVIPWKLI 240
  241 LSKPPVWALI ISHFCHNWGT FILLTWMPTY YNQVLKFNLT ESGLLCVLPW LTMAVFANIG 300
  301 GWIADTLVSR GLSITNVRKI MQSIGFLGPA FFLSQLSHVK TPAMAVLCMA CSQGSDAFSQ 360
  361 SGLYSNHQDI GPRYAGVLLG LSNTAGVLAG VFGTAATGYI LQRGSWDDVF KVAVALYLIG 420
  421 TLVWNLFATG EKILD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.69897
Match:	1pw4A
Description:	Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits