YRC Public Data Repository - Protein Structure Prediction

Protein:	Y955_SYNY3
Organism:	Synechocystis sp. PCC 6803 substr. Kazusa
Length:	384 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y955_SYNY3.

Description	E-value	Query Range	Subject Range
gi\|186464114, gi... - gi\|23127527\|ref\|ZP_00109394.1\| COG0566: rRNA methylases [Nostoc punctiforme PCC 73102], gi\|186681662...	285.0	[0..1]	[375..1]
gi\|33237725, gi\|... - gi\|33240198\|ref\|NP_875140.1\| rRNA methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375], ...	270.0	[0..26]	[384..53]
gi\|48892550, gi\|... - gi\|71674113\|ref\|ZP_00671860.1\| RNA methyltransferase TrmH, group 3 [Trichodesmium erythraeum IMS101]...	267.0	[0..96]	[371..9]
gi\|25325048 - pir\|\|AD1951 tRNA/rRNA methyltransferase [imported] - Nostoc sp. (strain PCC 7120) gi\|17130505, gi\|... - gi\|17228654\|ref\|NP_485202.1\| tRNA/rRNA methyltransferase [Nostoc sp. PCC 7120], gi\|17130505\|dbj\|BAB7...	259.0	[0..1]	[378..1]
gi\|75910610, gi\|... - gi\|75910610\|ref\|YP_324906.1\| RNA methyltransferase TrmH, group 3 [Anabaena variabilis ATCC 29413], g...	259.0	[0..1]	[378..1]
gi\|25316695 - pir\|\|A83664 tRNA/rRNA methyltransferase BH0113 [imported] - Bacillus halodurans (strain C-125) gi\|15612676, gi\|... - gi\|15612676\|ref\|NP_240979.1\| tRNA/rRNA methyltransferase [Bacillus halodurans C-125], gi\|10172725\|db...	259.0	[0..121]	[364..1]
gi\|68535387, gi\|... - gi\|68535387\|ref\|YP_250092.1\| putative rRNA methylase [Corynebacterium jeikeium K411], gi\|68262986\|em...	258.0	[0..54]	[368..4]
gi\|106895728, gi... - gi\|158319524\|ref\|YP_001512031.1\| RNA methyltransferase [Alkaliphilus oremlandii OhILAs], gi\|15813972...	257.0	[0..121]	[364..1]
gi\|48859457, gi\|... - gi\|67875040\|ref\|ZP_00504559.1\| RNA methyltransferase TrmH, group 3 [Clostridium thermocellum ATCC 27... gi\|196198671, gi... - gi\|196251913\|ref\|ZP_03150578.1\| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellu...	255.0	[0..92]	[366..6]
gi\|25316722 - pir\|\|H97287 rRNA methylase, YACO B. subtilis ortholog [imported] - Clostridium acetobutylicum gi\|15026220, gi\|... - gi\|15896402\|ref\|NP_349751.1\| rRNA methylase [Clostridium acetobutylicum ATCC 824], gi\|15026220\|gb\|AA...	254.0	[0..117]	[369..1]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEMPKKKFS PRSARGDKPR YGEQKPKLKR SGDKPRFNDD QPQGFKEKSD RFQDKPRPRT  60
   61 NDDKPRRAGD KPSNFKSRFK DKDRDKPRYG DDRPRRSGQK PPFGKTFPAA PPPMDSEQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.13
Match:	2j63A
Description:	No description for 2j63A was found.

Predicted Domain #2

Region A:
Residues: [119-384]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQEALDLLYG HHAVLAALDG DRQLNRIWIT SHLRHDIRYR TKIQTAKANG TVVDEVDNFR  60
   61 LNQITHNANH QGIAAQVAPY HYWELGDLID KAKSQSTAPV LIIIDSITDP HNLGAIIRTA 120
  121 EAFGAQGMVL PQRRVAGITS TVMKVAAGAL EHFPVARVVN LSRALETLKE SGFWIYGTVA 180
  181 GKQTALHQAD LREPMGLVIG SEGEGLSLLT QKHCDHLITI PLAGKTPSLN ASVAAAISLY 240
  241 EIFRQRGFDR PTLSHTASDL REVSED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.30103
Match:	1gz0A
Description:	RlmB, C-terminal domain; RlmB, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA methyltransferase activity	4.77771076540343	bayes_pls_golite062009
methyltransferase activity	4.0901595540349	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.01958090893547	bayes_pls_golite062009
rRNA methyltransferase activity	3.659149846946	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	2.59156540645412	bayes_pls_golite062009
tRNA methyltransferase activity	2.52700462137917	bayes_pls_golite062009
tRNA (guanine) methyltransferase activity	2.29844424181442	bayes_pls_golite062009
tRNA (guanine-N1-)-methyltransferase activity	2.0947794364355	bayes_pls_golite062009
transferase activity	1.84002196534744	bayes_pls_golite062009
catalytic activity	1.16774040077235	bayes_pls_golite062009
rRNA (guanosine-2'-O-)-methyltransferase activity	0.778889412216451	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	0.47764353619615	bayes_pls_golite062009
N-methyltransferase activity	0.0655574594365502	bayes_pls_golite062009
structural constituent of ribosome	0.0643795631250501	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: