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View Structure Prediction Details

Protein: ILVD_SYNY3
Organism: Synechocystis sp. PCC 6803 substr. Kazusa
Length: 561 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ILVD_SYNY3.

Description E-value Query
Range		 Subject
Range
gi|75699973, gi|... - gi|75906248|ref|YP_320544.1| dihydroxy-acid dehydratase [Anabaena variabilis ATCC 29413], gi|7569997...
 850.0 [0..1] [561..1]
ILVD_NOSS1 - Dihydroxy-acid dehydratase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=ilvD PE=3 SV=1
gi|25291591 - pir||AD2152 dihydroxyacid dehydratase [imported] - Nostoc sp. (strain PCC 7120)
 850.0 [0..1] [561..1]
gi|67856098, gi|... - gi|67921882|ref|ZP_00515398.1| Dihydroxy-acid dehydratase [Crocosphaera watsonii WH 8501], gi|678560...
 849.0 [0..1] [561..1]
gi|23129414 - gi|23129414|ref|ZP_00111241.1| COG0129: Dihydroxyacid dehydratase/phosphogluconate dehydratase [Nost...
 848.0 [0..1] [561..1]
ILVD_SYNJB - Dihydroxy-acid dehydratase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=ilvD PE=3 SV=1
gi|86609436 - gi|86609436|ref|YP_478198.1| dihydroxy-acid dehydratase [Cyanobacteria bacterium Yellowstone B-Prime...
 845.0 [0..2] [561..5]
ILVD_SYNEL - Dihydroxy-acid dehydratase OS=Synechococcus elongatus GN=ilvD PE=3 SV=1
ILVD_THEEB - Dihydroxy-acid dehydratase OS=Thermosynechococcus elongatus (strain BP-1) GN=ilvD PE=3 SV=1
 840.0 [0..1] [557..1]
ILVD_CLOTH - Dihydroxy-acid dehydratase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /...
 839.0 [0..6] [557..2]
ILVD_AQUAE - Dihydroxy-acid dehydratase OS=Aquifex aeolicus GN=ilvD PE=3 SV=1
ILVD_AQUAE - Dihydroxy-acid dehydratase OS=Aquifex aeolicus (strain VF5) GN=ilvD PE=3 SV=1
 838.0 [0..4] [557..2]
ILVD_NITEC - Dihydroxy-acid dehydratase OS=Nitrosomonas eutropha (strain C91) GN=ilvD PE=3 SV=1
 835.0 [0..1] [557..1]

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Predicted Domain #1
Region A:
Residues: [1-561] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNNPRSQVI TQGTQRSPNR AMLRAVGFGD DDFTKPIVGI ANGYSTITPC NMGINDLALR  60
   61 AEAGLRTAGA MPQLFGTITI SDGISMGTEG MKYSLVSREV IADSIETVCN GQRMDGVLAI 120
  121 GGCDKNMPGA MIAMARLNIP SIFVYGGTIK PGHYAGEDLT VVSAFEAVGQ YSAGKIDEET 180
  181 LYGIERNACP GAGSCGGMFT ANTMSSAFEA MGMSLPYSST MAAVDGEKAD STEESAKVLV 240
  241 EAIKKQILPS QILTRKAFEN AIAVIMAVGG STNAVLHLLA IANTIGVPLS LDDFETIRHK 300
  301 VPVLCDLKPS GKYVTTNLHA AGGIPQVMKI LLVNGILHGD ALTITGQTIA EVLADIPDQP 360
  361 PAGQDVIHSW DDPVYQEGHL AVLKGNLATE GSVAKISGVK KPVITGPAKV FESEEDCLEA 420
  421 ILAGKIQAGD VVVVRYEGPK GGPGMREMLA PTSAIIGAGL GDSVGLITDG RFSGGTYGLV 480
  481 VGHVAPEAYV GGAIALVQEG DQITIDAGKR LLQLNISEEE LAQRRAQWTP PQPRYPRGIL 540
  541 AKYAKLVSSS SLGAVTDIDL F

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 172.0
Match: 2gp4A
Description: No description for 2gp4A was found.

Predicted functions:

Term Confidence Notes
3-isopropylmalate dehydratase activity 5.35660492472618 bayes_pls_golite062009
catalytic activity 1.61959327305722 bayes_pls_golite062009
carbon-oxygen lyase activity 1.16841092671386 bayes_pls_golite062009
hydro-lyase activity 1.13002130445077 bayes_pls_golite062009
lyase activity 1.11228159918123 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle