YRC Public Data Repository - Protein Structure Prediction

Protein:	GLGB_SYNY3
Organism:	Synechocystis sp. PCC 6803 substr. Kazusa
Length:	770 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLGB_SYNY3.

Description	E-value	Query Range	Subject Range
GLGB_THEEB - 1,4-alpha-glucan branching enzyme GlgB OS=Thermosynechococcus elongatus (strain BP-1) GN=glgB PE=3 S... GLGB_SYNEL - 1,4-alpha-glucan-branching enzyme OS=Synechococcus elongatus GN=glgB PE=3 SV=1	643.0	[0..4]	[762..2]
gi\|67852681, gi\|... - gi\|67925474\|ref\|ZP_00518814.1\| 1,4-alpha-glucan branching enzyme [Crocosphaera watsonii WH 8501], gi...	635.0	[0..1]	[766..1]
gi\|25286746 - pir\|\|AG1895 1,4-alpha-glucan branching enzyme [imported] - Nostoc sp. (strain PCC 7120) GLGB_NOSS1 - 1,4-alpha-glucan branching enzyme GlgB OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=glgB PE=3 SV=1	632.0	[0..3]	[758..4]
gi\|186680708, gi... - gi\|23126496\|ref\|ZP_00108389.1\| COG0296: 1,4-alpha-glucan branching enzyme [Nostoc punctiforme PCC 73...	632.0	[0..3]	[761..4]
GLGB_SYNP6 - 1,4-alpha-glucan branching enzyme GlgB OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 140... GLGB_SYNE7 - 1,4-alpha-glucan branching enzyme GlgB OS=Synechococcus elongatus (strain PCC 7942) GN=glgB PE=1 SV=... gi\|97560 - pir\|\|JQ0550 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) - Synechococcus sp. (strain PCC 7942)	628.0	[0..2]	[764..9]
GLGB_ANAVT - 1,4-alpha-glucan branching enzyme GlgB OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=glgB...	628.0	[0..3]	[758..4]
GLGB_TRIEI - 1,4-alpha-glucan branching enzyme GlgB OS=Trichodesmium erythraeum (strain IMS101) GN=glgB PE=3 SV=1	616.0	[0..4]	[765..2]
gi\|86168600, gi\|... - gi\|87124031\|ref\|ZP_01079881.1\| 1,4-alpha-glucan branching enzyme [Synechococcus sp. RS9917], gi\|8616...	600.0	[0..1]	[767..1]
GLGB_PROMM - 1,4-alpha-glucan branching enzyme GlgB OS=Prochlorococcus marinus (strain MIT 9313) GN=glgB PE=3 SV=...	598.0	[0..1]	[756..1]
GLGB_PROMT - 1,4-alpha-glucan branching enzyme GlgB OS=Prochlorococcus marinus (strain NATL2A) GN=glgB PE=3 SV=1	597.0	[0..8]	[756..12]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYTINADQV HQIVHNLHHD PFEVLGCHPL GDHGKVNQWV IRAYLPTAEA VTVLLPTDRR  60
   61 EVIMTTVHHP NFFECVLELE EPKNYQLRIT ENGHERVIYD PYGFKTPKLT DFDLHVFGE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.29
Match:	1m7xA
Description:	1,4-alpha-glucan branching enzyme, N-terminal domain N; 1,4-alpha-glucan branching enzyme; 1,4-alpha-glucan branching enzyme, central domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [120-770]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNHHRIYEKL GAHLMTVDGV KGVYFAVWAP NARNVSILGD FNNWDGRLHQ MRKRNNMVWE  60
   61 LFIPELGVGT SYKYEIKNWE GHIYEKTDPY GFYQEVRPKT ASIVADLDGY QWHDEDWLEA 120
  121 RRTSDPLSKP VSVYELHLGS WLHTAYDEPV KTLHGEGVPV EVSEWNTGAR FLTYYELVDK 180
  181 LIPYVKELGY THIELLPIAE HPFDGSWGYQ VTGYYAPTSR FGSPEDFMYF VDQCHLNGIG 240
  241 VIIDWVPGHF PKDGHGLAFF DGTHLYEHGD PRKGEHKEWG TLIFNYGRNE VRNFLVANAL 300
  301 FWFDKYHIDG MRVDAVASML YLDYCREEGE WVANEYGGRE NLEAADFLRQ VNSVVYSYFP 360
  361 GILSIAEEST SWPMVSWPTY VGGLGFNLKW NMGWMHDMLD YFSMDPWFRQ FHQNSITFSM 420
  421 WYNHSENYML ALSHDEVVHG KSNMLGKMPG DEWQKYANVR ALFTYMFTHP GKKTMFMSME 480
  481 FGQWSEWNVW GDLEWHLLNF PPHQQLKQFF TELNHLYKNE PALYSNDFDE SGFQWIDCSD 540
  541 NRHSVVSFIR RAKNSAEFVV TICNFTPQPH SHYRVGVPVP GFYTELFNSD ARQYGGSNMG 600
  601 NLGGKWTEEW SFHEQPYSLD LCLPPLSVLV LKLSQNAEEN TVPAEEASNI A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	132.0
Match:	1m7xA
Description:	1,4-alpha-glucan branching enzyme, N-terminal domain N; 1,4-alpha-glucan branching enzyme; 1,4-alpha-glucan branching enzyme, central domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.81707419439683	bayes_pls_golite062009
protein binding	1.40303524581236	bayes_pls_golite062009
phosphorylase activity	0.99159540154441	bayes_pls_golite062009
glucosidase activity	0.766503513427695	bayes_pls_golite062009
hexosaminidase activity	0.763360027922833	bayes_pls_golite062009
cation transmembrane transporter activity	0.687079660016821	bayes_pls_golite062009
sugar binding	0.52048704356718	bayes_pls_golite062009
chitinase activity	0.500233744020165	bayes_pls_golite062009
ion transmembrane transporter activity	0.498330151821515	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	0.266938437560648	bayes_pls_golite062009
beta-N-acetylhexosaminidase activity	0.263065978664289	bayes_pls_golite062009
ligand-gated ion channel activity	0.0325030313870961	bayes_pls_golite062009
ligand-gated channel activity	0.0325030313870961	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: