YRC Public Data Repository - Protein Structure Prediction

Protein:	DRB5_ARATH
Organism:	Arabidopsis thaliana
Length:	393 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DRB5_ARATH.

Description	E-value	Query Range	Subject Range
gi\|9759153 - gi\|9759153\|dbj\|BAB09709.1\| unnamed protein product [Arabidopsis thaliana]	248.0	[0..1]	[393..1]
gi\|254199232, gi... - gi\|254199232\|ref\|ZP_04905598.1\| ribonuclease III [Burkholderia mallei FMH], gi\|194524818\|ref\|YP_0020... gi\|194314086, gi... - gi\|254178423\|ref\|ZP_04885078.1\| ribonuclease III [Burkholderia mallei ATCC 10399], gi\|194314086\|ref\|... gi\|167000779, gi... - gi\|243063329\|gb\|EES45515.1\| ribonuclease III [Burkholderia mallei PRL-20], gi\|167000779\|ref\|ZP_02266... gi\|53725351, gi\|... - gi\|53725351\|ref\|YP_102339.1\| ribonuclease III [Burkholderia mallei ATCC 23344], gi\|52428774\|gb\|AAU49... gi\|121599423, gi... - gi\|121599423\|ref\|YP_993770.1\| ribonuclease III [Burkholderia mallei SAVP1], gi\|121228233\|gb\|ABM50751... gi\|126450086, gi... - gi\|126450086\|ref\|YP_001081328.1\| ribonuclease III [Burkholderia mallei NCTC 10247], gi\|126242956\|gb\|... gi\|238522001, gi... - gi\|238562760\|ref\|ZP_00439921.2\| ribonuclease III [Burkholderia mallei GB8 horse 4], gi\|238522001\|gb\|... gi\|124293483, gi... - gi\|124385463\|ref\|YP_001028764.1\| ribonuclease III [Burkholderia mallei NCTC 10229], gi\|124293483\|gb\|... gi\|148026833, gi... - gi\|254357706\|ref\|ZP_04973979.1\| ribonuclease III [Burkholderia mallei 2002721280], gi\|194574581\|ref\|... gi\|254205539, gi... - gi\|254205539\|ref\|ZP_04911891.1\| ribonuclease III [Burkholderia mallei JHU], gi\|194528972\|ref\|YP_0020...	162.0	[0..6]	[360..78]
gi\|167739551 - gi\|167739551\|ref\|ZP_02412325.1\| ribonuclease III [Burkholderia pseudomallei 14] gi\|254258167, gi... - gi\|254258167\|ref\|ZP_04949221.1\| ribonuclease III [Burkholderia pseudomallei 1710a], gi\|254216856\|gb\|... gi\|76580968, gi\|... - gi\|76811515\|ref\|YP_334276.1\| ribonuclease III [Burkholderia pseudomallei 1710b], gi\|76580968\|gb\|ABA5...	159.0	[0..6]	[360..78]
gi\|92872274 - gi\|92872274\|gb\|ABE80978.1\| Double-stranded RNA binding [Medicago truncatula]	159.0	[0..1]	[372..1]
gi\|53720035, gi\|... - gi\|53720035\|ref\|YP_109021.1\| ribonuclease III [Burkholderia pseudomallei K96243], gi\|52210449\|emb\|CA... gi\|167895244 - gi\|167895244\|ref\|ZP_02482646.1\| ribonuclease III [Burkholderia pseudomallei 7894] gi\|167816752 - gi\|167816752\|ref\|ZP_02448432.1\| ribonuclease III [Burkholderia pseudomallei 91] gi\|167919873 - gi\|167919873\|ref\|ZP_02506964.1\| ribonuclease III [Burkholderia pseudomallei BCC215]	159.0	[0..6]	[360..78]
gi\|83625534 - gi\|83625534\|ref\|ZP_00935765.1\| COG0532: Translation initiation factor 2 (IF-2; GTPase) [Burkholderia... gi\|67636025, gi\|... - gi\|67636025\|ref\|ZP_00434974.1\| COG0532: Translation initiation factor 2 (IF-2; GTPase) [Burkholderia... gi\|83621001 - gi\|83621001\|ref\|ZP_00931414.1\| COG0532: Translation initiation factor 2 (IF-2; GTPase) [Burkholderia... gi\|67641136 - gi\|67641136\|ref\|ZP_00439921.1\| COG0532: Translation initiation factor 2 (IF-2; GTPase) [Burkholderia... gi\|67647018 - gi\|67647018\|ref\|ZP_00445267.1\| COG0532: Translation initiation factor 2 (IF-2; GTPase) [Burkholderia... gi\|84522072 - gi\|84522072\|ref\|ZP_01009208.1\| COG0532: Translation initiation factor 2 (IF-2; GTPase) [Burkholderia... gi\|85066994 - gi\|85066994\|ref\|ZP_01027847.1\| COG0532: Translation initiation factor 2 (IF-2; GTPase) [Burkholderia... gi\|87315905, gi\|... - gi\|87315905\|ref\|ZP_01096927.1\| COG0532: Translation initiation factor 2 (IF-2; GTPase) [Burkholderia...	157.0	[0..6]	[360..26]
gi\|116215040, gi... - gi\|75821682\|ref\|ZP_00751494.1\| COG0571: dsRNA-specific ribonuclease [Vibrio cholerae RC385], gi\|1162... gi\|75827725 - gi\|75827725\|ref\|ZP_00757160.1\| COG0571: dsRNA-specific ribonuclease [Vibrio cholerae O395] gi\|75815092 - gi\|75815092\|ref\|ZP_00745619.1\| COG0571: dsRNA-specific ribonuclease [Vibrio cholerae V52] gi\|75818649, gi\|... - gi\|75818649\|ref\|ZP_00748785.1\| COG0571: dsRNA-specific ribonuclease [Vibrio cholerae V51], gi\|116219...	157.0	[0..4]	[155..74]
gi\|82529191 - gi\|82529191\|ref\|ZP_00888444.1\| COG0532: Translation initiation factor 2 (IF-2; GTPase) [Burkholderia... gi\|82536251 - gi\|82536251\|ref\|ZP_00895259.1\| hypothetical protein Bpse110_02002517 [Burkholderia pseudomallei 1106... gi\|100232914, gi... - gi\|83677663\|ref\|ZP_00939406.1\| COG0532: Translation initiation factor 2 (IF-2; GTPase) [Burkholderia... gi\|67754405, gi\|... - gi\|67754405\|ref\|ZP_00493314.1\| COG0532: Translation initiation factor 2 (IF-2; GTPase) [Burkholderia... gi\|67759209, gi\|... - gi\|67759209\|ref\|ZP_00497951.1\| COG0532: Translation initiation factor 2 (IF-2; GTPase) [Burkholderia...	156.0	[0..6]	[360..26]
DRB6_ORYSJ - Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp. japonica GN=DRB6 PE=2 SV=1	156.0	[0..1]	[379..1]

Back

Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHAA  60
   61 AEVSLNVLSS RVPSKSLTAK ILDETGIYKN LLQETAHRAG LDLPMYTSVR SGSCHFPGFS 120
  121 CTVELAGMTF TGESAKTKKQ AEKNAAIAAW SSLKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	1o0wA
Description:	RNase III endonuclease catalytic domain; RNase III, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [156-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLDSQDEE KEQEAVARVL SRFKPKEVRR RETTNQWRRR TSQQDSNKDL LIERLRWINL  60
   61 LTNQASSSSS TSTPNQHKNS SFI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.555	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.543	a.48.3	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
View	Download	0.543	a.48.3	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
View	Download	0.528	a.230.1	Description not found.
View	Download	0.495	a.60.6	DNA polymerase beta, N-terminal domain-like
View	Download	0.483	a.60.5	Barrier-to-autointegration factor, BAF
View	Download	0.483	a.60.5	Barrier-to-autointegration factor, BAF
View	Download	0.453	a.74.1	Cyclin-like
View	Download	0.453	a.74.1	Cyclin-like
View	Download	0.402	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.283	a.159.4	Description not found.
View	Download	0.277	a.231.1	Description not found.
View	Download	0.217	a.4.1	Homeodomain-like
View	Download	0.214	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like

Predicted Domain #3

Region A:
Residues: [239-393]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLIPPPPPPK SSKILPFIQQ YKDRSSQEAK TETATEMINS KAKVNETSTR LSKQMPFSDM  60
   61 NRYNFVGGCS VNPYSLAPAV QMRSVIPVFA APPPKPNPNL NPSSLSSSVN EFTSSNNSCS 120
  121 VLNTPGLGGQ EKKNLTREMI KLGSESRILD QTHDS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits