YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24114518, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24114518, gi|....

Description	E-value	Query Range	Subject Range
gi\|110807093, gi... - gi\|110807093\|ref\|YP_690613.1\| 50S ribosomal subunit protein L13 [Shigella flexneri 5 str. 8401], gi\|...	246.0	[0..8]	[167..1]
gi\|62129486, gi\|... - gi\|62181853\|ref\|YP_218270.1\| 50S ribosomal protein L13 [Salmonella enterica subsp. enterica serovar ...	227.0	[0..21]	[167..1]
RL13_SYMTH - 50S ribosomal protein L13 OS=Symbiobacterium thermophilum GN=rplM PE=3 SV=1 RL13_SYMTH - 50S ribosomal protein L13 OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=rplM PE=3 SV=1	226.0	[0..25]	[167..1]
RK13_ARATH - 50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana GN=RPL13 PE=2 SV=1	226.0	[0..1]	[167..55]
gi\|21956801, gi\|... - gi\|22124054\|ref\|NP_667477.1\| 50S ribosomal protein L13 [Yersinia pestis KIM], gi\|21956801\|gb\|AAM8372... gi\|45443549, gi\|... - gi\|45443549\|ref\|NP_995088.1\| 50S ribosomal protein L13 [Yersinia pestis biovar Microtus str. 91001],...	225.0	[0..21]	[167..1]
RL13_HAES1 - 50S ribosomal protein L13 OS=Haemophilus somnus (strain 129Pt) GN=rplM PE=3 SV=1	224.0	[0..26]	[167..1]
gi\|114773863, gi... - gi\|114773863\|ref\|ZP_01450822.1\| 50S ribosomal subunit protein L13 [alpha proteobacterium HTCC2255], ... gi\|114773863 - gi\|114773863\|ref\|ZP_01450822.1\| 50S ribosomal subunit protein L13 [alpha proteobacterium HTCC2255] gi\|221135443 - gi\|221135443\|ref\|ZP_03561746.1\| 50S ribosomal protein L13 [Glaciecola sp. HTCC2999]	224.0	[0..26]	[167..1]
RL13_HISS2 - 50S ribosomal protein L13 OS=Histophilus somni (strain 2336) GN=rplM PE=3 SV=1	224.0	[0..26]	[167..1]
gi\|34909522, gi\|... - gi\|34909522\|ref\|NP_916108.1\| putative ribosomal protein L13 [Oryza sativa (japonica cultivar-group)]... gi\|125527707 - gi\|125527707\|gb\|EAY75821.1\| hypothetical protein OsI_03735 [Oryza sativa Indica Group]	224.0	[0..1]	[167..42]
RL13_PHOLL - 50S ribosomal protein L13 OS=Photorhabdus luminescens subsp. laumondii GN=rplM PE=3 SV=1 gi\|253782577, gi... - gi\|253991127\|ref\|YP_003042483.1\| 50s ribosomal protein l13 [Photorhabdus asymbiotica], gi\|253782577\|... RL13_PHOLL - 50S ribosomal protein L13 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 10556...	223.0	[0..26]	[167..1]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCEPQQLKT FGCSPTCNYL LGKLLMKTFT AKPETVKRDW YVVDATGKTL GRLATELARR  60
   61 LRGKHKAEYT PHVDTGDYII VLNADKVAVT GNKRTDKVYY HHTGHIGGIK QATFEEMIAR 120
  121 RPERVIEIAV KGMLPKGPLG RAMFRKLKVY AGNEHNHAAQ QPQVLDI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.30103
Match:	1p85H
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	10.0286073270483	bayes_pls_golite062009
structural molecule activity	9.45133141168812	bayes_pls_golite062009
binding	1.22159759850364	bayes_pls_golite062009
RNA binding	0.840527362301162	bayes_pls_golite062009
nucleic acid binding	0.513360853458228	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: