YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376247, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	988 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376247, gi|....

Description	E-value	Query Range	Subject Range
gi\|197258076 - gi\|197258076\|gb\|ACH56222.1\| transposase [Achromobacter sp. AO22] gi\|170650766, gi... - gi\|170650766\|ref\|YP_001740006.1\| Tn3 family transposase [Escherichia coli SMS-3-5], gi\|170522042\|gb\|... gi\|226426358, gi... - gi\|226810131\|ref\|YP_002791827.1\| Tn3 transposase [Enterobacter cloacae], gi\|226807866\|ref\|YP_0027915... gi\|68558985, gi\|... - gi\|94313520\|ref\|YP_586729.1\| transposase Tn3 [Ralstonia metallidurans CH34], gi\|94313399\|ref\|YP_5866...	1353.0	[0..1]	[988..1]
gi\|68053502 - gi\|68053502\|gb\|AAY85172.1\| transposase-like protein [Leptospirillum ferriphilum]	1348.0	[0..1]	[988..1]
gi\|34915806 - gi\|34915806\|emb\|CAD83840.1\| transposase [Pseudomonas sp. A19-1] gi\|75208158, gi\|... - gi\|75208158\|ref\|ZP_00708538.1\| COG4644: Transposase and inactivated derivatives, TnpA family [Escher... gi\|9507570, gi\|5... - gi\|9507570\|ref\|NP_052901.1\| transposase [Plasmid R100], gi\|5103169\|dbj\|BAA78805.1\| transposase for T... gi\|89033266, gi\|... - gi\|89033266\|gb\|ABD59944.1\| Tn21 transposase [Escherichia coli], gi\|83627332\|dbj\|BAE54333.1\| transpos... gi\|10185690 - gi\|10185690\|gb\|AAG14402.1\|AF188331_1 putative transposase [Shigella flexneri] gi\|187736855 - gi\|187736855\|ref\|YP_001816593.1\| TnpA-Tn21 [Escherichia coli 1520] gi\|62550840 - gi\|62550840\|emb\|CAH64763.1\| transposase of Tn21 [uncultured bacterium] gi\|194337967 - gi\|194337967\|emb\|CAQ51379.1\| Tn21 transposase [Salmonella enterica subsp. enterica serovar Typhimuri... gi\|133905379, gi... - gi\|89103748\|ref\|ZP_01176313.1\| COG4644: Transposase and inactivated derivatives, TnpA family [Yersin... gi\|145301314, gi... - gi\|145301314\|ref\|YP_001144154.1\| TnpA transposase [Aeromonas salmonicida subsp. salmonicida A449], g... gi\|40795485 - gi\|40795485\|gb\|AAR91465.1\| TnpA transposase [Klebsiella pneumoniae] gi\|145848930 - gi\|145848930\|emb\|CAM91479.1\| transposase for transposon Tn21 [Salmonella enterica]	1346.0	[0..1]	[988..1]
gi\|27261170 - gi\|27261170\|gb\|AAN87567.1\|AF457211_11 TnpA [Escherichia coli]	1345.0	[0..1]	[988..1]
gi\|60686977 - gi\|60686977\|gb\|AAX35685.1\| transposase-like protein [Acidithiobacillus caldus]	1345.0	[0..1]	[988..1]
gi\|51470637, gi\|... - gi\|51492594\|ref\|YP_067891.1\| Tn3-family transposase [Aeromonas punctata], gi\|51470637\|emb\|CAG15128.1... gi\|217507874, gi... - gi\|217970547\|ref\|YP_002355781.1\| transposase Tn3 family protein [Thauera sp. MZ1T], gi\|217507874\|gb\|... gi\|156534778, gi... - gi\|156936524\|ref\|YP_001440439.1\| hypothetical protein ESA_pESA2p06570 [Enterobacter sakazakii ATCC B...	1344.0	[0..1]	[988..1]
gi\|38639697, gi\|... - gi\|38639697\|ref\|NP_943466.1\| TnpA transposase [Klebsiella pneumoniae], gi\|38016795\|gb\|AAR07816.1\| Tn... gi\|168998667, gi... - gi\|238549684\|dbj\|BAH66035.1\| TnpA transposase [Klebsiella pneumoniae NTUH-K2044], gi\|168998667\|ref\|Y...	1343.0	[0..1]	[988..1]
gi\|30248839, gi\|... - gi\|30248839\|ref\|NP_840909.1\| Tn3 family transposase [Nitrosomonas europaea ATCC 19718], gi\|30180434\|...	1343.0	[0..1]	[988..1]
gi\|32815770 - gi\|32815770\|gb\|AAP88287.1\| Tn3 family transposase [Delftia acidovorans]	1342.0	[0..1]	[988..1]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRRSILSAA ERDSLLVLPD TQDELIRHYT FSEPDLSLIR QRRGDANRLG IAVQLCLLRF  60
   61 PGQGLLPDAT VPMPLLQWIG QQLQLDPVCW PQYAEREETR REHLLELRVY LGMEPFSQVH 120
  121 HRQAVHTTTE LALQTDKGIV LANSVVETLR H

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [152-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KHIILPTLDV VERVCAEALT RANRRIYDTL TEPLSGSHRH RLDDLLKLRD NNKTTTLAWL  60
   61 RLSPVKPNSR HMLEHIERLK VWQALDLPIG VDRLIHQNRL LKIAREGGQM TPADLA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [268-355]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KFEPQRRYAT LVALAIEGMA TVTDEIIDLH DRIMGKLFND AKKRHQKQFQ ASGKAINAKV  60
   61 RLFGRIGQVL IDAKQAGDDP FAAIEGVI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.975	f.17.1	F1F0 ATP synthase subunit C

Predicted Domain #4

Region A:
Residues: [356-452]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SWEAFAKSVT EAQSLAQPEE FDFLYRLGES YATLRRYAPT FLTALKLRAA PAAKGVLEAI  60
   61 EVLRSMNNDN ARKVPADAPI DFIKPRWQKL VITDTGI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [453-540]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRRYYELCAL SEMRNALRSG DIWVQGSRQF KDFEDYLVPP AKFVSLKQTN QLPLAVATDC  60
   61 EQYLNERLTQ LETQLATVNS MAQANELP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [541-665]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAIITASGLK ITPLDAVVPD TAQRLIDQAA RILPHVKITE LLLEVDEWTG FTRHFAHLKS  60
   61 GVLAKDKNLL LTTILADAIN LGLTKMAESC PGTTYAKLAW LQAWHIRDET YGAALSELVN 120
  121 AQYRH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7

Region A:
Residues: [666-791]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFAEHWGDGS TSSSDGQNFR TGNKAESTGH INPKYGSSPG RTFYTHISDQ YAPFHTKVVN  60
   61 VGVRDSTYVL DGLLYHESDL RIEEHYTDTA GFTDHVFALM HLLGFRFAPR IRDLGETKLY 120
  121 IPKRDV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8

Region A:
Residues: [792-867]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TYEGLKSMIG GTLNIKLIRT HWDEILRLAT SIKQGTVTAS LMLRKLGSYP RQNGLAVALR  60
   61 ELGRIERTLF ILDWLQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #9

Region A:
Residues: [868-988]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVELRRRVHA GLNKGEARNA LARAVFFNRL GEIRDRSFEQ QRYRASGLNL VTAAIVLWNT  60
   61 VYLERVAHGL RAKGHAVDEE LLQYLSPLGW EHINLTGDYL WRSSAKIGSG KFRPLRPLSP 120
  121 A

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits