YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376353, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376353, gi|....

Description	E-value	Query Range	Subject Range
gi\|115365647, gi... - gi\|115377327\|ref\|ZP_01464534.1\| isrso8-transposase orfb protein [Stigmatella aurantiaca DW4/3-1], gi...	161.0	[0..1]	[213..22]
gi\|219993523, gi... - gi\|89210394\|ref\|ZP_01188784.1\| Integrase, catalytic region [Halothermothrix orenii H 168], gi\|891600...	156.0	[0..1]	[213..8]
gi\|75188988, gi\|... - gi\|75188988\|ref\|ZP_00702255.1\| COG2801: Transposase and inactivated derivatives [Escherichia coli E2... gi\|194437827, gi... - gi\|83586674\|ref\|ZP_00925306.1\| COG2801: Transposase and inactivated derivatives [Escherichia coli 10... gi\|218698131, gi... - gi\|218698131\|ref\|YP_002405798.1\| hypothetical protein EC55989_4948 [Escherichia coli 55989], gi\|2183...	155.0	[0..2]	[214..113]
gi\|110615289, gi... - gi\|110805741\|ref\|YP_689261.1\| IS600 ORF2 [Shigella flexneri 5 str. 8401], gi\|110615289\|gb\|ABF03956.1...	155.0	[0..2]	[214..115]
gi\|75212177, gi\|... - gi\|75212177\|ref\|ZP_00712217.1\| COG2801: Transposase and inactivated derivatives [Escherichia coli B1...	153.0	[0..2]	[214..113]
gi\|24051322, gi\|... - gi\|24112443\|ref\|NP_706953.1\| IS600 ORF2 [Shigella flexneri 2a str. 301], gi\|24051322\|gb\|AAN42660.1\| ...	152.0	[0..2]	[214..6]
gi\|81246342, gi\|... - gi\|82544931\|ref\|YP_408878.1\| IS600 ORF2 [Shigella boydii Sb227], gi\|81246342\|gb\|ABB67050.1\| IS600 OR...	150.0	[0..2]	[214..6]
gi\|82777166, gi\|... - gi\|82777166\|ref\|YP_403515.1\| IS600 ORF2 [Shigella dysenteriae Sd197], gi\|81241314\|gb\|ABB62024.1\| IS6...	150.0	[0..2]	[214..16]
gi\|106762437, gi... - gi\|106882640\|ref\|ZP_01350042.1\| Integrase, catalytic region [Psychromonas ingrahamii 37], gi\|1067624...	149.0	[0..1]	[213..32]

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Predicted Domain #1

Region A:
Residues: [1-60]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSKSGYYD WHKRPANVIS VETLKLYRLV RQLFKQSRGS LGNREMVKKL RKEGYQVGRY  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [61-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVRKIMHRLR LKATQRCAYK VTTQRKHSDA VADNLLNMNF NPVSANQVWA GDVTYLKTGE  60
   61 GWMYLAVVMD LYSRRIVGWR IDKRMTTDLI SKALIKAYNL RQPARGLVFH SDRGSQYTSK 120
  121 QFGRLLSSYG IRASMGDVGA CWDNAEGVQN SVSG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.69897
Match:	1k6yA
Description:	N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nuclease activity	1.81796593394339	bayes_pls_golite062009
exonuclease activity	1.64964907710028	bayes_pls_golite062009
catalytic activity	1.62277843225829	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	1.58702937619673	bayes_pls_golite062009
hydrolase activity	1.41857676124086	bayes_pls_golite062009
transposase activity	1.09803761537443	bayes_pls_golite062009
ribonuclease activity	0.71352601607444	bayes_pls_golite062009
deoxyribonuclease activity	0.63299586096139	bayes_pls_golite062009
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	0.62821439153618	bayes_pls_golite062009
endonuclease activity	0.150927275899469	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: