YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376340, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376340, gi|....

Description	E-value	Query Range	Subject Range
gi\|75188988, gi\|... - gi\|75188988\|ref\|ZP_00702255.1\| COG2801: Transposase and inactivated derivatives [Escherichia coli E2... gi\|194437827, gi... - gi\|83586674\|ref\|ZP_00925306.1\| COG2801: Transposase and inactivated derivatives [Escherichia coli 10... gi\|218698131, gi... - gi\|218698131\|ref\|YP_002405798.1\| hypothetical protein EC55989_4948 [Escherichia coli 55989], gi\|2183...	197.0	[0..1]	[271..105]
gi\|219993523, gi... - gi\|89210394\|ref\|ZP_01188784.1\| Integrase, catalytic region [Halothermothrix orenii H 168], gi\|891600...	197.0	[0..1]	[267..1]
gi\|110615289, gi... - gi\|110805741\|ref\|YP_689261.1\| IS600 ORF2 [Shigella flexneri 5 str. 8401], gi\|110615289\|gb\|ABF03956.1...	196.0	[0..1]	[271..107]
gi\|115365647, gi... - gi\|115377327\|ref\|ZP_01464534.1\| isrso8-transposase orfb protein [Stigmatella aurantiaca DW4/3-1], gi...	194.0	[0..1]	[268..15]
gi\|75212177, gi\|... - gi\|75212177\|ref\|ZP_00712217.1\| COG2801: Transposase and inactivated derivatives [Escherichia coli B1...	193.0	[0..1]	[271..105]
gi\|23306896 - gi\|23306896\|emb\|CAD48417.1\| putative transposase [Escherichia coli]	192.0	[0..1]	[277..112]
gi\|95111924 - gi\|95111924\|emb\|CAK16649.1\| putative transposase, IS3 family (orf 2) [Pseudomonas entomophila L48] gi\|104782937, gi... - gi\|95111924\|emb\|CAK16649.1\| putative transposase, IS3 family (orf 2) [Pseudomonas entomophila L48], ...	191.0	[0..1]	[276..1]
gi\|116878505, gi... - gi\|116878505\|ref\|YP_356766.2\| IS3 putative transposase [Pelobacter carbinolicus DSM 2380], gi\|114843...	191.0	[0..1]	[276..15]
gi\|46242587 - gi\|46242587\|gb\|AAS83411.1\| putative transposase OCP [uncultured Ralstonia sp.]	190.0	[0..1]	[278..116]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQLCQLFDV HPSGYYAWRS CAKSKRQCDN ERLIGQLKQC WLESGGVYGY RKLHRDLRDL  60
   61 GEQCGINRVH RLMQRA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [77-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQRAQVGYRK PRTRSGEQHV VTQNRLERQF NPLAPNKAWV TDITYIKTHE GWLYLGAVMD  60
   61 LFSRRIIGWS MGSRITKELA LDALLMAVWS RKPAGKVLVH SAQGSQYTSH DWSEFLSAHG 120
  121 LEGSMSRRGN CHDNAVAESF FQLLKRERIK RKIYATRDDA KMDVFNYIEM FYNPKRQHSS 180
  181 NDGLSPLEYE RQYFNEVKSR LVK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.32
Match:	1bcmA
Description:	mu transposase, C-terminal domain; mu transposase, core domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits