YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376335, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	307 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376335, gi|....

Description	E-value	Query Range	Subject Range
gi\|88793389, gi\|... - gi\|88793389\|ref\|ZP_01109104.1\| transposase [Alteromonas macleodii 'Deep ecotype'], gi\|88775248\|gb\|EA...	281.0	[0..1]	[306..1]
gi\|29825732, gi\|... - gi\|38638374\|ref\|NP_943557.1\| putative transposase [Listonella anguillarum], gi\|38638358\|ref\|NP_94359...	280.0	[0..1]	[307..1]
gi\|160860360, gi... - gi\|160876581\|ref\|YP_001555897.1\| transposase IS4 family protein [Shewanella baltica OS195], gi\|16087...	278.0	[0..1]	[306..1]
gi\|57472464 - gi\|57472464\|gb\|AAW51291.1\| putative transposase [Vibrio cholerae]	277.0	[0..1]	[306..1]
gi\|78690145, gi\|... - gi\|78690919\|ref\|ZP_00855554.1\| ISSod12, transposase [Shewanella sp. MR-7], gi\|78690564\|ref\|ZP_008552...	273.0	[0..1]	[307..1]
gi\|82496776, gi\|... - gi\|82496776\|ref\|ZP_00882340.1\| ISSod12, transposase [Shewanella sp. MR-4], gi\|82405185\|gb\|EAP45861.1...	273.0	[0..1]	[307..1]
gi\|24374807, gi\|... - gi\|24374807\|ref\|NP_718850.1\| ISSod12, transposase [Shewanella oneidensis MR-1], gi\|24349488\|gb\|AAN56... SO3296 - ISSod12 transposase	273.0	[0..1]	[307..1]
tr\|Q52T86\|Q52T86... - Putative transposase OS=Vibrio cholerae non-O1/non-O139 PE=4 SV=1 gi\|62632921 - gi\|62632921\|gb\|AAX89423.1\| putative transposase [Vibrio cholerae non-O1/non-O139]	272.0	[0..1]	[305..1]

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Predicted Domain #1

Region A:
Residues: [1-307]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKPRYKTTN WKQYNQALIN RGSLTFWIDE DAIAKWKAKV EPPKKGRPQL FSDLAITTAL  60
   61 MVKRIFSMPL RALQGFINSV FKLGDIPLSC PHYTCISKRA KTVNIAFKTK TRGAIEHLAI 120
  121 DSTGLKVYGE GEWKVKKHGT DGKRRVWRKL HIAVDTHSHE IIAAELSLSG VTDAEVMPNL 180
  181 LQQTHRKIRN ISGDGAYDTK ACHEAVRRKR ALVLIPPREG AALWEKGHPR NLAVSWQQLH 240
  241 GSNKQWKKRY GYHRRSISET AMYRIKQLLG GTLSMRNYNA QVGETYAMIR ALNKLTGLSM 300
  301 PETHYVA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.41
Match:	1muhA
Description:	Transposase inhibitor (Tn5 transposase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.53924789709051	bayes_pls_golite062009
nuclease activity	1.33447740033502	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	1.23347009562032	bayes_pls_golite062009
hydrolase activity	1.22075366957547	bayes_pls_golite062009
exonuclease activity	1.20458535230258	bayes_pls_golite062009
transposase activity	0.965908684749648	bayes_pls_golite062009
deoxyribonuclease activity	0.330313608754008	bayes_pls_golite062009
ribonuclease activity	0.26323966197813	bayes_pls_golite062009
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	0.248165509716873	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: