YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376323, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376323, gi|....

Description	E-value	Query Range	Subject Range
SOA0063 - ISSod8 transposase gi\|24345182, gi\|... - gi\|24376291\|ref\|NP_720399.1\| ISSod8, transposase [Shewanella oneidensis MR-1], gi\|24345182\|gb\|AAN529...	253.0	[0..1]	[185..1]
gi\|29377878, gi\|... - gi\|29377878\|ref\|NP_817005.1\| IS1216 transposase [Enterococcus faecalis V583], gi\|29345330\|gb\|AAO8307...	250.0	[0..3]	[182..4]
gi\|121490913, gi... - gi\|9246955\|gb\|AAF86221.1\| transposase [Enterococcus faecium], gi\|124112020\|ref\|YP_001019049.1\| putat...	250.0	[0..3]	[182..4]
gi\|30058654 - gi\|30058654\|gb\|AAK67263.1\| TnpA [Enterococcus faecalis]	249.0	[0..3]	[182..4]
gi\|2467234, gi\|2... - gi\|2467234\|emb\|CAA63524.1\| transposase [Lactococcus lactis], gi\|2467229\|emb\|CAA63518.1\| transposase ... gi\|156522764, gi... - gi\|156522764\|ref\|YP_001429538.1\| transposase [Lactococcus lactis subsp. lactis], gi\|156522759\|ref\|YP... gi\|187729650, gi... - gi\|187729650\|ref\|YP_001798651.1\| transposase [Lactococcus garvieae], gi\|171854434\|dbj\|BAG16441.1\| tr...	249.0	[0..3]	[182..4]
gi\|18450298 - gi\|18450298\|ref\|NP_569169.1\| transposase [Listeria innocua Clip11262] gi\|16415799, gi\|... - gi\|18450298\|ref\|NP_569169.1\| Transposase [Listeria innocua Clip11262], gi\|16415799\|emb\|CAC42010.1\| T...	248.0	[0..3]	[182..2]
gi\|69243917, gi\|... - gi\|69243917\|ref\|ZP_00602495.1\| Integrase, catalytic region [Enterococcus faecium DO], gi\|68196643\|gb...	248.0	[0..3]	[182..2]

Back

Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLNFSGRHF PSDIIMQALR YYLAYKLSYR EIEEMFAERN IHFDHSTLNR WVIKYAPLLE  60
   61 AIFRKKKRPI SGSWRMDETY IKMKGQWAYY YRAVDKFSAV IDFYLSETRD EKAAHAFFTK 120
  121 AINQHGLPEK VVIDKSGANA AALDTVNIRL WLSGCMLFMI EVLTVKYLNN IVEQSHRKVK 180
  181 GKINA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.5
Match:	1k6yA
Description:	N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.53924789709051	bayes_pls_golite062009
nuclease activity	1.33447740033502	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	1.23347009562032	bayes_pls_golite062009
hydrolase activity	1.22075366957547	bayes_pls_golite062009
exonuclease activity	1.20458535230258	bayes_pls_golite062009
transposase activity	0.965908684749648	bayes_pls_golite062009
deoxyribonuclease activity	0.330313608754008	bayes_pls_golite062009
ribonuclease activity	0.26323966197813	bayes_pls_golite062009
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	0.248165509716873	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: