YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347917, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347917, gi|....

Description	E-value	Query Range	Subject Range
gi\|115365647, gi... - gi\|115377327\|ref\|ZP_01464534.1\| isrso8-transposase orfb protein [Stigmatella aurantiaca DW4/3-1], gi...	183.0	[0..1]	[269..22]
gi\|75188988, gi\|... - gi\|75188988\|ref\|ZP_00702255.1\| COG2801: Transposase and inactivated derivatives [Escherichia coli E2... gi\|194437827, gi... - gi\|83586674\|ref\|ZP_00925306.1\| COG2801: Transposase and inactivated derivatives [Escherichia coli 10... gi\|218698131, gi... - gi\|218698131\|ref\|YP_002405798.1\| hypothetical protein EC55989_4948 [Escherichia coli 55989], gi\|2183...	180.0	[0..2]	[267..113]
gi\|110615289, gi... - gi\|110805741\|ref\|YP_689261.1\| IS600 ORF2 [Shigella flexneri 5 str. 8401], gi\|110615289\|gb\|ABF03956.1...	180.0	[0..2]	[267..115]
gi\|219993523, gi... - gi\|89210394\|ref\|ZP_01188784.1\| Integrase, catalytic region [Halothermothrix orenii H 168], gi\|891600...	178.0	[0..1]	[263..8]
gi\|75212177, gi\|... - gi\|75212177\|ref\|ZP_00712217.1\| COG2801: Transposase and inactivated derivatives [Escherichia coli B1...	177.0	[0..2]	[267..113]
gi\|46242587 - gi\|46242587\|gb\|AAS83411.1\| putative transposase OCP [uncultured Ralstonia sp.]	175.0	[0..1]	[267..123]
gi\|48826351 - ref\|ZP_00287561.1\| COG2801: Transposase and inactivated derivatives [Enterococcus faecium] gi\|69244271, gi\|... - gi\|69244271\|ref\|ZP_00602739.1\| Integrase, catalytic region [Enterococcus faecium DO], gi\|68196457\|gb...	174.0	[0..2]	[264..9]
gi\|18092588 - gi\|18092588\|gb\|AAL59363.1\|AF454951_42 putative transposase [Brucella melitensis biovar Abortus]	174.0	[0..2]	[269..122]
gi\|63255922, gi\|... - gi\|66045215\|ref\|YP_235056.1\| integrase catalytic subunit [Pseudomonas syringae pv. syringae B728a], ...	173.0	[0..2]	[263..9]

Back

Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSKSGYYD WHKRPANVIS VETLKLYRLV RQLFKQSRGS LGNREMVKKL RKEGYQVGRY  60
   61 LVRKIMHRLR LKATQRCAYK VTTQRKHSDA VAD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [94-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLLNMNFNPV SANQVWAGDV TYLKTGEGWM YLAVVMDLYS RRIVGWRIDK RMTTDLISKA  60
   61 LIKAYNLRQP ARGLVFHSDR GSQYTSKQFG RLLSSYGIRA SMGDVGACWD NAVVERFFGS 120
  121 LKHDWIFKVA QPTREFMKQD VTAYIKYYNL ERLHSANNDL SPVEFENSQV KVSSLG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.62
Match:	1bcmA
Description:	mu transposase, C-terminal domain; mu transposase, core domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits