YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347917, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347917, gi|....

Description	E-value	Query Range	Subject Range
gi\|115365647, gi... - gi\|115377327\|ref\|ZP_01464534.1\| isrso8-transposase orfb protein [Stigmatella aurantiaca DW4/3-1], gi...	183.0	[0..1]	[269..22]
gi\|75188988, gi\|... - gi\|75188988\|ref\|ZP_00702255.1\| COG2801: Transposase and inactivated derivatives [Escherichia coli E2... gi\|194437827, gi... - gi\|83586674\|ref\|ZP_00925306.1\| COG2801: Transposase and inactivated derivatives [Escherichia coli 10... gi\|218698131, gi... - gi\|218698131\|ref\|YP_002405798.1\| hypothetical protein EC55989_4948 [Escherichia coli 55989], gi\|2183...	180.0	[0..2]	[267..113]
gi\|110615289, gi... - gi\|110805741\|ref\|YP_689261.1\| IS600 ORF2 [Shigella flexneri 5 str. 8401], gi\|110615289\|gb\|ABF03956.1...	180.0	[0..2]	[267..115]
gi\|219993523, gi... - gi\|89210394\|ref\|ZP_01188784.1\| Integrase, catalytic region [Halothermothrix orenii H 168], gi\|891600...	178.0	[0..1]	[263..8]
gi\|75212177, gi\|... - gi\|75212177\|ref\|ZP_00712217.1\| COG2801: Transposase and inactivated derivatives [Escherichia coli B1...	177.0	[0..2]	[267..113]
gi\|46242587 - gi\|46242587\|gb\|AAS83411.1\| putative transposase OCP [uncultured Ralstonia sp.]	175.0	[0..1]	[267..123]
gi\|48826351 - ref\|ZP_00287561.1\| COG2801: Transposase and inactivated derivatives [Enterococcus faecium] gi\|69244271, gi\|... - gi\|69244271\|ref\|ZP_00602739.1\| Integrase, catalytic region [Enterococcus faecium DO], gi\|68196457\|gb...	174.0	[0..2]	[264..9]
gi\|18092588 - gi\|18092588\|gb\|AAL59363.1\|AF454951_42 putative transposase [Brucella melitensis biovar Abortus]	174.0	[0..2]	[269..122]
gi\|63255922, gi\|... - gi\|66045215\|ref\|YP_235056.1\| integrase catalytic subunit [Pseudomonas syringae pv. syringae B728a], ...	173.0	[0..2]	[263..9]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSKSGYYD WHKRPANVIS VETLKLYRLV RQLFKQSRGS LGNREMVKKL RKEGYQVGRY  60
   61 LVRKIMHRLR LKATQRCAYK VTTQRKHSDA VAD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.778	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.741	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.714	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.693	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.652	N/A	N/A	a.4.1	Homeodomain-like

Predicted Domain #2

Region A:
Residues: [94-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLLNMNFNPV SANQVWAGDV TYLKTGEGWM YLAVVMDLYS RRIVGWRIDK RMTTDLISKA  60
   61 LIKAYNLRQP ARGLVFHSDR GSQYTSKQFG RLLSSYGIRA SMGDVGACWD NAVVERFFGS 120
  121 LKHDWIFKVA QPTREFMKQD VTAYIKYYNL ERLHSANNDL SPVEFENSQV KVSSLG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.62
Match:	1bcmA
Description:	mu transposase, C-terminal domain; mu transposase, core domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits