YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345202, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345202, gi|....

Description	E-value	Query Range	Subject Range
gi\|24376323, gi\|... - gi\|24376323\|ref\|NP_720431.1\| ISSod8, transposase [Shewanella oneidensis MR-1], gi\|24345220\|gb\|AAN530... SOA0105 - ISSod8 transposase	202.0	[0..1]	[181..1]
gi\|149116622, gi... - gi\|217975560\|ref\|YP_002360230.1\| Transposase and inactivated derivatives-like protein [Shewanella ba... gi\|151367518, gi... - gi\|152998504\|ref\|YP_001355425.1\| integrase catalytic region [Shewanella baltica OS185], gi\|151367518... gi\|160873073, gi... - gi\|160873073\|ref\|YP_001557079.1\| integrase catalytic region [Shewanella baltica OS195], gi\|160858595...	202.0	[0..1]	[181..1]
gi\|120597850, gi... - gi\|82743988\|ref\|ZP_00906596.1\| ISSod8, transposase [Shewanella sp. W3-18-1], gi\|82718650\|gb\|EAP53608... gi\|77811336, gi\|... - gi\|77813557\|ref\|ZP_00812831.1\| ISSod8, transposase [Shewanella putrefaciens CN-32], gi\|77811336\|gb\|E...	201.0	[0..1]	[181..1]
gi\|29377878, gi\|... - gi\|29377878\|ref\|NP_817005.1\| IS1216 transposase [Enterococcus faecalis V583], gi\|29345330\|gb\|AAO8307...	199.0	[0..3]	[180..4]
gi\|7595745 - gi\|7595745\|gb\|AAF64430.1\|AF229200_3 transposase [Enterococcus faecium]	199.0	[0..3]	[180..4]
gi\|30058654 - gi\|30058654\|gb\|AAK67263.1\| TnpA [Enterococcus faecalis]	197.0	[0..3]	[180..4]
gi\|13274136 - gi\|13274136\|emb\|CAC33837.1\| putative IS1519L transposase [Lactobacillus sakei]	197.0	[0..3]	[180..2]
gi\|69243917, gi\|... - gi\|69243917\|ref\|ZP_00602495.1\| Integrase, catalytic region [Enterococcus faecium DO], gi\|68196643\|gb...	197.0	[0..3]	[180..2]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLNFSGRHF PSDIIMQALR YYLAYKLSYR EIEEMFAERN IHFDHSTLNR WVIKYAPLLE  60
   61 AIFRKKKRLV SGSWRMDETY IKMKGQWVYY YRAVDKFGAV IDFYLSETRD EKAAHAFFTK 120
  121 AINQHGLPEK VVIDKSGANA AALDTVNIRL WLSGCMLFMI EVLTVKYLNN IVEQSQPKSE 180
  181 G

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.42
Match:	1k6yA
Description:	N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.53924789709051	bayes_pls_golite062009
nuclease activity	1.33447740033502	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	1.23347009562032	bayes_pls_golite062009
hydrolase activity	1.22075366957547	bayes_pls_golite062009
exonuclease activity	1.20458535230258	bayes_pls_golite062009
transposase activity	0.965908684749648	bayes_pls_golite062009
deoxyribonuclease activity	0.330313608754008	bayes_pls_golite062009
ribonuclease activity	0.26323966197813	bayes_pls_golite062009
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	0.248165509716873	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: