YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376255, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376255, gi|....

Description	E-value	Query Range	Subject Range
gi\|170780432, gi... - gi\|90969160\|ref\|YP_536857.1\| DNA-invertase [Staphylococcus aureus], gi\|90960975\|dbj\|BAE92846.1\| DNA-... gi\|49398110, gi\|... - gi\|49398110\|ref\|YP_031709.1\| transposon resolvase [Staphylococcus aureus subsp. aureus MSSA476], gi\|... gi\|239597314, gi... - gi\|239637097\|ref\|ZP_04678090.1\| DNA-invertase hin [Staphylococcus warneri L37603], gi\|239597314\|gb\|E... gi\|227899609, gi... - gi\|227899609\|ref\|ZP_04017414.1\| recombinase [Staphylococcus aureus subsp. aureus TCH60], gi\|22785208... gi\|253725369, gi... - gi\|253730888\|ref\|ZP_04865053.1\| recombinase [Staphylococcus aureus subsp. aureus USA300_TCH959], gi\|... gi\|251801620, gi... - gi\|251814874\|ref\|ZP_04829347.1\| recombinase [Staphylococcus aureus subsp. aureus TCH70], gi\|25180162... gi\|16119213, gi\|... - gi\|16119213\|ref\|NP_395549.1\| DNA-invertase [Staphylococcus aureus subsp. aureus N315], gi\|13774152\|d...	111.0	[0..1]	[102..85]
gi\|68448334, gi\|... - gi\|70727608\|ref\|YP_254524.1\| DNA-invertase [Staphylococcus haemolyticus JCSC1435], gi\|70726762\|ref\|Y... gi\|242349041, gi... - gi\|242373249\|ref\|ZP_04818823.1\| recombinase [Staphylococcus epidermidis M23864:W1], gi\|242349041\|gb\|... gi\|62754196 - gi\|62754196\|gb\|AAX99117.1\| BinL protein [Staphylococcus aureus]	110.0	[0..1]	[102..85]
gi\|32470541, gi\|... - gi\|32470541\|ref\|NP_863212.1\| DNA-invertase [Staphylococcus epidermidis ATCC 12228], gi\|27316935\|gb\|A...	109.0	[0..1]	[102..51]
gi\|49483990, gi\|... - gi\|49483990\|ref\|YP_041214.1\| resolvase [Staphylococcus aureus subsp. aureus MRSA252], gi\|49242119\|em... gi\|221141712 - gi\|221141712\|ref\|ZP_03566205.1\| resolvase [Staphylococcus aureus subsp. aureus str. JKD6009] gi\|221138408 - gi\|221138408\|ref\|ZP_03563210.1\| resolvase [Staphylococcus aureus subsp. aureus str. JKD6008] gi\|22476847 - gi\|22476847\|gb\|AAM97336.1\|AF426834_2 resolvase/integrase BinL [Staphylococcus epidermidis] gi\|421394 - gi\|421394\|pir\|\|S11781 DNA-invertase - Staphylococcus aureus transposon Tn552 gi\|227245678, gi... - gi\|227557942\|ref\|ZP_03987989.1\| recombinase [Staphylococcus aureus subsp. aureus MN8], gi\|227245678\|...	109.0	[0..1]	[102..85]
BINL_STAAU - Transposon Tn552 resolvase OS=Staphylococcus aureus GN=tnpR PE=3 SV=1	109.0	[0..1]	[102..85]
gi\|13793989 - gi\|13793989\|gb\|AAK38454.1\| resolvase/integrase BinR [Staphylococcus epidermidis]	109.0	[0..1]	[101..85]
gi\|11230706 - gi\|11230706\|emb\|CAC16668.1\| resolvase/integrase [Staphylococcus haemolyticus]	109.0	[0..1]	[101..85]
gi\|57635991, gi\|... - gi\|57854758\|ref\|YP_187535.1\| resolvase family site-specific recombinase [Staphylococcus epidermidis ... gi\|161510936, gi... - gi\|161510936\|ref\|YP_001569059.1\| recombinase [Staphylococcus aureus subsp. aureus USA300_TCH1516], g...	108.0	[0..1]	[102..85]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHGILSGTE EHTMIAKVLT EFMIDLAAAM ARDDYETRRK RQAQGIEKAK TLGKYLGRQP  60
   61 DHGLRQNIRL LLDEGKSWSQ VQSLLKCSRS TIAKAVKLNE LR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.522879
Match:	1gdtA
Description:	gamma,delta resolvase (C-terminal domain); gamma,delta resolvase, catalytic domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	1.76956337706487	bayes_pls_golite062009
DNA binding	1.58100039759954	bayes_pls_golite062009
nucleic acid binding	1.46839493313894	bayes_pls_golite062009
binding	1.095333525217	bayes_pls_golite062009
transcription factor activity	1.0707787742149	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: