YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376243, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	418 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376243, gi|....

Description	E-value	Query Range	Subject Range
gi\|83587328, gi\|... - gi\|83587328\|ref\|ZP_00925956.1\| COG0389: Nucleotidyltransferase/DNA polymerase involved in DNA repair...	446.0	[0..1]	[417..1]
gi\|24051469, gi\|... - gi\|24112571\|ref\|NP_707081.1\| DNA polymerase V subunit UmuC [Shigella flexneri 2a str. 301], gi\|24051... gi\|30040949, gi\|... - gi\|30062701\|ref\|NP_836872.1\| DNA polymerase V subunit UmuC [Shigella flexneri 2a str. 2457T], gi\|300... gi\|110805183, gi... - gi\|110805183\|ref\|YP_688703.1\| DNA polymerase V subunit UmuC [Shigella flexneri 5 str. 8401], gi\|1106...	446.0	[0..1]	[417..1]
gi\|89108029, gi\|... - gi\|89108029\|ref\|AP_001809.1\| DNA polymerase V, subunit C [Escherichia coli str. K-12 substr. W3110],... gi\|218351430, gi... - gi\|218694698\|ref\|YP_002402365.1\| DNA polymerase V subunit UmuC [Escherichia coli 55989], gi\|21835143... gi\|218553739, gi... - gi\|218553739\|ref\|YP_002386652.1\| DNA polymerase V subunit UmuC [Escherichia coli IAI1], gi\|218360507... EG11056 - translesion error-prone DNA polymerase V subunit; DNA polymerase activity / Translesion DNA polymera... gi\|170020448, gi... - gi\|170020448\|ref\|YP_001725402.1\| DNA polymerase V subunit UmuC [Escherichia coli ATCC 8739], gi\|1697... gi\|238900415, gi... - gi\|238900415\|ref\|YP_002926211.1\| DNA polymerase V, subunit C [Escherichia coli BW2952], gi\|238860839... gi\|251784691, gi... - gi\|251784691\|ref\|YP_002998995.1\| hypothetical protein B21_01169 [Escherichia coli BL21], gi\|24237696... gi\|209918423, gi... - gi\|209918423\|ref\|YP_002292507.1\| DNA polymerase V subunit UmuC [Escherichia coli SE11], gi\|209911682... gi\|253977381, gi... - gi\|254288074\|ref\|YP_003053822.1\| DNA polymerase V subunit UmuC [Escherichia coli BL21(DE3)], gi\|2539... gi\|170080812, gi... - gi\|170080812\|ref\|YP_001730132.1\| DNA polymerase V, subunit C [Escherichia coli str. K-12 substr. DH1... gi\|253973167, gi... - gi\|254161266\|ref\|YP_003044374.1\| DNA polymerase V subunit UmuC [Escherichia coli B str. REL606], gi\|... EG11056 - translesion error-prone DNA polymerase V subunit; DNA polymerase activity / Translesion DNA polymera... gi\|124498073, gi... - gi\|124532288\|ref\|ZP_01702182.1\| DNA-directed DNA polymerase [Escherichia coli B], gi\|124498073\|gb\|EA... UMUC_ECOLI - Protein umuC - Escherichia coli gi\|75190239, gi\|... - gi\|75190239\|ref\|ZP_00703506.1\| COG0389: Nucleotidyltransferase/DNA polymerase involved in DNA repair...	445.0	[0..1]	[417..1]
gi\|157160687, gi... - gi\|75195337\|ref\|ZP_00705407.1\| COG0389: Nucleotidyltransferase/DNA polymerase involved in DNA repair...	445.0	[0..1]	[417..1]
gi\|188494421, gi... - gi\|75511635\|ref\|ZP_00734282.1\| COG0389: Nucleotidyltransferase/DNA polymerase involved in DNA repair... gi\|192955505, gi... - gi\|75233919\|ref\|ZP_00718379.1\| COG0389: Nucleotidyltransferase/DNA polymerase involved in DNA repair...	445.0	[0..1]	[417..1]
gi\|254592061, gi... - gi\|254792661\|ref\|YP_003077498.1\| DNA polymerase V, subunit C [Escherichia coli O157:H7 str. TW14359]... gi\|208732550, gi... - gi\|208815902\|ref\|ZP_03257081.1\| protein UmuC [Escherichia coli O157:H7 str. EC4045], gi\|208732550\|gb... gi\|208728509, gi... - gi\|208808708\|ref\|ZP_03251045.1\| protein UmuC [Escherichia coli O157:H7 str. EC4206], gi\|208728509\|gb... gi\|195938839 - gi\|195938839\|ref\|ZP_03084221.1\| DNA polymerase V subunit UmuC [Escherichia coli O157:H7 str. EC4024] gi\|189372493, gi... - gi\|189372493\|gb\|EDU90909.1\| protein UmuC [Escherichia coli O157:H7 str. EC869], gi\|168787685\|ref\|ZP_... gi\|15830933, gi\|... - gi\|15830933\|ref\|NP_309706.1\| DNA polymerase V subunit UmuC [Escherichia coli O157:H7 str. Sakai], gi... gi\|217318447, gi... - gi\|217328020\|ref\|ZP_03444102.1\| protein UmuC [Escherichia coli O157:H7 str. TW14588], gi\|217318447\|g... gi\|209400560, gi... - gi\|209400560\|ref\|YP_002270124.1\| protein UmuC [Escherichia coli O157:H7 str. EC4115], gi\|209161960\|g... gi\|208737807, gi... - gi\|208822322\|ref\|ZP_03262641.1\| protein UmuC [Escherichia coli O157:H7 str. EC4042], gi\|208737807\|gb... gi\|168752765, gi... - gi\|188013532\|gb\|EDU51654.1\| protein UmuC [Escherichia coli O157:H7 str. EC4113], gi\|168752765\|ref\|ZP... gi\|209772706, gi... - pir\|\|G90838 UmuC protein [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952), gi\|... gi\|188999983, gi... - gi\|188999983\|gb\|EDU68969.1\| protein UmuC [Escherichia coli O157:H7 str. EC4076], gi\|168782542\|ref\|ZP... gi\|168771075, gi... - gi\|189360080\|gb\|EDU78499.1\| protein UmuC [Escherichia coli O157:H7 str. EC4486], gi\|168771075\|ref\|ZP... gi\|15830933, gi\|... - gi\|15830933\|ref\|NP_309706.1\| DNA polymerase IV [Escherichia coli O157:H7], gi\|13361143\|dbj\|BAB35102.... gi\|189364859, gi... - gi\|189364859\|gb\|EDU83275.1\| protein UmuC [Escherichia coli O157:H7 str. EC4501], gi\|168765429\|ref\|ZP... gi\|168756549, gi... - gi\|189356339\|gb\|EDU74758.1\| protein UmuC [Escherichia coli O157:H7 str. EC4401], gi\|168756549\|ref\|ZP...	445.0	[0..1]	[417..1]
gi\|148126 - gi\|148126\|gb\|AAA24729.1\| UmuC protein	445.0	[0..1]	[417..1]
gi\|25300614 - pir\|\|G85696 SOS mutagenesis and repair [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|12514881, gi\|... - gi\|15801406\|ref\|NP_287423.1\| DNA polymerase V subunit UmuC [Escherichia coli O157:H7 EDL933], gi\|125...	443.0	[0..1]	[417..1]
gi\|26247497, gi\|... - gi\|26247497\|ref\|NP_753537.1\| DNA polymerase V subunit UmuC [Escherichia coli CFT073], gi\|26107898\|gb...	443.0	[0..1]	[417..1]
gi\|75254994 - gi\|75254994\|ref\|ZP_00726920.1\| COG0389: Nucleotidyltransferase/DNA polymerase involved in DNA repair...	442.0	[0..1]	[413..1]

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Predicted Domain #1

Region A:
Residues: [1-418]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFALVDANSF YCSCEQVFRP DWRGKPVVVL SNNDGMVVAA NRQAKEAGIP KFVPYFQIRD  60
   61 LCQKKGVIAL SSNYELYADL SAKMMQIIGR FAPEQYVYSI DESFLSFTRC YPAITCLKTQ 120
  121 AQAIRRAVWK EARLPVCVGI GSTLTLAKIA NHAAKKISGY AGVCVIESEP QRLAILQQMP 180
  181 VGEVWGIGRR LSAKLTLMGI TTAAQLAAMP PGLARKQFSI EIERTVRELN GQVCKQWDEA 240
  241 RADKQQIFST RSVGERIIDI DALQQALCKH AGIAAAKARQ QGSSCKSMLV FASNSPHDER 300
  301 PVSYKAVVQF PCPTSSTAEI TAAVSRVLPQ VFRSGVRYYK IGVGLIELMP TKHIQYDLFH 360
  361 APTENPALMQ TFDKLNQRYG SDCIFMAAQG IEHKWAMRRD KLTPQYTTKW LNLPKVQC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.30103
Match:	2asdA
Description:	oxoG-modified Insertion Ternary Complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits