YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24351260, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	329 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24351260, gi|....

Description	E-value	Query Range	Subject Range
gi\|82497822, gi\|... - gi\|82497822\|ref\|ZP_00883348.1\| lysophospholipase L2 [Shewanella sp. MR-4], gi\|82404208\|gb\|EAP44903.1... gi\|78504156, gi\|... - gi\|78688094\|ref\|ZP_00852816.1\| lysophospholipase L2 [Shewanella sp. ANA-3], gi\|78504156\|gb\|EAP17727....	183.0	[0..1]	[329..1]
gi\|114049490, gi... - gi\|78691158\|ref\|ZP_00855786.1\| lysophospholipase L2 [Shewanella sp. MR-7], gi\|78509432\|gb\|EAP22826.1...	183.0	[0..1]	[329..1]
gi\|217975437, gi... - gi\|217975437\|ref\|YP_002360188.1\| alpha/beta hydrolase fold protein [Shewanella baltica OS223], gi\|21... gi\|68518277, gi\|... - gi\|68544031\|ref\|ZP_00583709.1\| Lysophospholipase [Shewanella baltica OS155], gi\|68518277\|gb\|EAN41860...	182.0	[0..1]	[328..1]
gi\|160877597, gi... - gi\|160877597\|ref\|YP_001556913.1\| alpha/beta hydrolase fold [Shewanella baltica OS195], gi\|160863119\|...	182.0	[0..1]	[328..1]
gi\|82719597, gi\|... - gi\|82743063\|ref\|ZP_00905731.1\| lysophospholipase L2 [Shewanella sp. W3-18-1], gi\|82719597\|gb\|EAP5449...	182.0	[0..1]	[329..1]
gi\|145566687, gi... - gi\|77816437\|ref\|ZP_00815626.1\| Lysophospholipase [Shewanella putrefaciens CN-32], gi\|77808611\|gb\|EAO...	181.0	[0..1]	[329..1]
gi\|114619428 - gi\|114619428\|ref\|XP_001163565.1\| PREDICTED: epoxide hydrolase 2, cytoplasmic isoform 2 [Pan troglody...	173.0	[0..14]	[329..156]
gi\|109659347, gi... - gi\|115495833\|ref\|NP_001069002.1\| epoxide hydrolase 2, cytoplasmic [Bos taurus], gi\|109659347\|gb\|AAI1...	171.0	[0..13]	[314..223]

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Predicted Domain #1

Region A:
Residues: [1-329]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTPSVFST EHDLNTSEQQ AFWQTVVQDT LNTPDGLTLA YMMVKHPKAH ASIVISSGRV  60
   61 ESYLKYQELI FDLYQQGYSV FAIDHRGQGL SSRMTANPHQ GHVRRFNDYI DDFALFMQTV 120
  121 VLKHATSPLF LLGHSMGGAI GTLYLKQHPD VFTAAVFSAP MYGIKLPMPK GFVRWLASKL 180
  181 DTSLNGGEPN YVLSGQNYKA VPVPFKGNDL THCQSRYQAY RELYEAAPKL QLGSPTNRWL 240
  241 TESLDAADAC VLATTHIRTP ILILQAGEDK IVDNAAQNLA VSSNCQLKVI AGAAHEIFME 300
  301 KDSYRNQALN YALDFFKRYA TRDVDKQAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.39794
Match:	1cqzA
Description:	Epoxide hydrolase, N-terminal domain; Mammalian epoxide hydrolase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.39629727416851	bayes_pls_golite062009
lipase activity	0.602417432627875	bayes_pls_golite062009
carboxylesterase activity	0.535924720022784	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.307380251731525	bayes_pls_golite062009
palmitoyl-(protein) hydrolase activity	0.054530214464529	bayes_pls_golite062009
palmitoyl-CoA hydrolase activity	0.00303228391703936	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: