YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24351201, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	335 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24351201, gi|....

Description	E-value	Query Range	Subject Range
gi\|41205692 - gi\|41205692\|gb\|AAR99612.1\| dTDP-glucose 4,6-dehydratase [Geobacillus stearothermophilus]	332.0	[0..1]	[332..3]
gi\|25292389 - pir\|\|E84113 nucleotide sugar epimerase (biosynthesis of lipopolysaccharide O antigen) BH3709 [import... gi\|15616271, gi\|... - gi\|15616271\|ref\|NP_244576.1\| nucleotide sugar epimerase (biosynthesis of lipopolysaccharide O antige...	328.0	[0..1]	[333..1]
gi\|145220024, gi... - gi\|71482267\|ref\|ZP_00661964.1\| NAD-dependent epimerase/dehydratase [Prosthecochloris vibrioformis DS...	328.0	[0..1]	[333..15]
gi\|67774686, gi\|... - gi\|67936382\|ref\|ZP_00529389.1\| NAD-dependent epimerase/dehydratase [Chlorobium phaeobacteroides DSM ...	327.0	[0..1]	[333..54]
gi\|78171348, gi\|... - gi\|78189149\|ref\|YP_379487.1\| capsular polysaccharide biosynthesis protein I [Chlorobium chlorochroma...	326.0	[0..1]	[333..1]
gi\|114777522, gi... - gi\|114777522\|ref\|ZP_01452503.1\| capsular polysaccharide biosynthesis protein I [Mariprofundus ferroo...	325.0	[0..2]	[333..72]
gi\|113886897, gi... - gi\|113972213\|ref\|YP_736006.1\| UDP-glucuronate 5'-epimerase [Shewanella sp. MR-4], gi\|113886897\|gb\|AB...	323.0	[0..1]	[335..1]
gi\|78509405, gi\|... - gi\|78691195\|ref\|ZP_00855822.1\| UDP-glucuronate 5'-epimerase [Shewanella sp. MR-7], gi\|78509405\|gb\|EA...	323.0	[0..1]	[335..1]
gi\|110598632, gi... - gi\|110598632\|ref\|ZP_01386898.1\| NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reduct...	322.0	[0..1]	[334..1]

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Predicted Domain #1

Region A:
Residues: [1-335]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYLVTGAAG FIGANVSKRL CAMGHEVVGI DNLNDYYDVA LKLARLAPLE ALSNFHFIKL  60
   61 DLADREGIAK LFAQQGFQRV IHLAAQAGVR YSLDNPLAYA DSNLVGHLTI LEGCRHHKIE 120
  121 HLVYASSSSV YGLNQKMPFS TEDSVDHPIS LYAATKKANE LMSHTYSHLY QLPTTGLRFF 180
  181 TVYGPWGRPD MALFKFTKAI LAGETIDVYN HGDLSRDFTY IDDIVEGIIR VQDKPPSPTP 240
  241 DWRVETGTPA NSSAPYRVFN IGNGSPVQLL DFITALERAL GIEAKKQFLP MQPGDVHATW 300
  301 ADTEDLFKAV GYKSQVDIDT GVAKFVDWYR NFYAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	83.69897
Match:	1g1aA
Description:	dTDP-glucose 4,6-dehydratase (RmlB)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
UDP-glucose 4-epimerase activity	2.13934644118967	bayes_pls_golite062009
catalytic activity	1.79741889688267	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	1.03956654822048	bayes_pls_golite062009
nucleic acid binding	0.868888700854563	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	0.82673050487418	bayes_pls_golite062009
DNA binding	0.790382977752475	bayes_pls_golite062009
binding	0.784517759335365	bayes_pls_golite062009
transcription regulator activity	0.613310508772122	bayes_pls_golite062009
transcription factor activity	0.11102650759187	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: