YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376113, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376113, gi|....

Description	E-value	Query Range	Subject Range
gi\|21912927 - gi\|21912927\|emb\|CAC84143.2\| thioredoxin peroxidase [Nicotiana tabacum]	148.0	[0..1]	[157..77]
gi\|3193232 - gi\|3193232\|gb\|AAC77922.1\| peroxidoxin-2 [Onchocerca ochengi]	146.0	[0..4]	[157..10]
gi\|157886060, gi... - gi\|50539996\|ref\|NP_001002468.1\| peroxiredoxin 2 [Danio rerio], gi\|49900827\|gb\|AAH76347.1\| Peroxiredo...	146.0	[0..3]	[155..7]
gi\|2736280 - gi\|2736280\|gb\|AAC48312.1\| thioredoxin peroxidase [Onchocerca volvulus]	145.0	[0..4]	[157..10]
gi\|91203633 - gi\|91203633\|emb\|CAJ71286.1\| strongly similar to peroxiredoxin (thioredoxin peroxidase) [Candidatus K...	145.0	[0..2]	[158..7]
gi\|1076722 - gi\|1076722\|pir\|\|S49173 hypothetical protein - barley (fragment)	145.0	[0..1]	[157..17]
gi\|17232133, gi\|... - gi\|17232133\|ref\|NP_488681.1\| peroxiredoxin [Nostoc sp. PCC 7120], gi\|17133778\|dbj\|BAB76340.1\| peroxi... gi\|75701970, gi\|... - gi\|75908245\|ref\|YP_322541.1\| Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen... gi\|25285298 - pir\|\|AI2385 peroxiredoxin [imported] - Nostoc sp. (strain PCC 7120)	145.0	[0..2]	[157..11]
gi\|2347119 - gi\|2347119\|gb\|AAC38831.1\| thioredoxin peroxidase [Dirofilaria immitis]	145.0	[0..4]	[157..10]
gi\|9965598 - gi\|9965598\|gb\|AAG10102.1\|AF105258_1 peroxidoxin-2 [Litomosoides sigmodontis]	145.0	[0..4]	[157..10]
gi\|21553667 - gi\|21553667\|gb\|AAM62760.1\| 2-cys peroxiredoxin-like protein [Arabidopsis thaliana]	144.0	[0..1]	[157..77]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAQGQKLPA ATLSQLTKDG MVNHQVTELF AGKKVVLFAV PGAFTPTCSE AHLPGYVVLA  60
   61 DELKAKGVDL IACVSVNDAF VMKAWGEAQN ASELLMLADG DASFTKALGL EMDTAGFGGV 120
  121 RSQRYAMIID NGVVTLLNVE APKSFEVSKA EVVLAALS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.221849
Match:	1nm3A
Description:	C-terminal, Grx domain of Hybrid-Prx5; N-terminal, Prx domain of Hybrid-Prx5
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
antioxidant activity	3.66884588063322	bayes_pls_golite062009
peroxidase activity	3.43831566988273	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	3.43831566988273	bayes_pls_golite062009
glutathione peroxidase activity	2.56524997297011	bayes_pls_golite062009
peroxiredoxin activity	2.12777217096121	bayes_pls_golite062009
thioredoxin peroxidase activity	1.96134566495756	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.8187537496904	bayes_pls_golite062009
protein disulfide oxidoreductase activity	1.47769936616412	bayes_pls_golite062009
disulfide oxidoreductase activity	1.32811008894503	bayes_pls_golite062009
binding	1.25802922431343	bayes_pls_golite062009
selenium binding	1.1082524159827	bayes_pls_golite062009
catalytic activity	0.672192331361968	bayes_pls_golite062009
transcription regulator activity	0.52671047749426	bayes_pls_golite062009
protein binding	0.134341907247724	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: