YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24351139, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	438 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24351139, gi|....

Description	E-value	Query Range	Subject Range
gi\|114332698, gi... - gi\|69950004\|ref\|ZP_00637936.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	283.0	[0..2]	[437..4]
gi\|91794886, gi\|... - gi\|91794886\|ref\|YP_564537.1\| osmolarity sensor protein [Shewanella denitrificans OS217], gi\|91716888...	273.0	[0..1]	[437..1]
gi\|78684473, gi\|... - gi\|78684473\|ref\|ZP_00849257.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	271.0	[0..1]	[438..1]
gi\|146294928, gi... - gi\|77814459\|ref\|ZP_00813718.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	271.0	[0..1]	[438..1]
gi\|82721469, gi\|... - gi\|82741200\|ref\|ZP_00903927.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	271.0	[0..1]	[438..1]
gi\|78689934, gi\|... - gi\|78689934\|ref\|ZP_00854589.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	268.0	[0..1]	[438..1]
gi\|113972139, gi... - gi\|82496220\|ref\|ZP_00881790.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	268.0	[0..1]	[438..1]
gi\|78361924, gi\|... - gi\|78366023\|ref\|ZP_00836306.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	267.0	[0..3]	[438..1]
gi\|160877441, gi... - gi\|160877441\|ref\|YP_001556757.1\| osmolarity sensor protein [Shewanella baltica OS195], gi\|160862963\|...	259.0	[0..10]	[438..1]
gi\|68545092, gi\|... - gi\|68545092\|ref\|ZP_00584643.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	252.0	[0..1]	[438..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKWWQRLL PRSAFSQTVL LIGCLLLINQ LVSYVTVAVY VLKPSYQQIN QLIARQINLL  60
   61 FVDGIDIGRE HLTIVDALNA KVRDDGMKVY NQQQAREAGI EQATYYGFWS SQMTEYLGGD 120
  121 AEVRVTHGRV LQVWIRPPQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [140-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APSVWIKVPL IGQNVSDLSP LTLYLMVIGA LSVAGGWWFA RQQNRPLRRL QKAAISVSRG  60
   61 EFPDPLPLKG SSELVEVTNA FNQM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.2
Match:	2f95B
Description:	M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [224-438]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AHSMKQLEQD RALLMAGISH DLRTPLTRIR LASEMMVEDD QYLKDGIVND IEDMDAIISQ  60
   61 FIAYIRQDQE ASREPGQINK LIQDIAQAEA NRDGEIELAL ADCPEALFQG LAIKRVLSNL 120
  121 VENAFRYGSG WVRISSQFDG KRIGFSVEDN GPGIDESQIP TLFQPFTQGD IARGSVGSGL 180
  181 GLAIIKRIID RHQGQITLSN RAAGGLKAQV WLPRE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.0
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits