YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24351139, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	438 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24351139, gi|....

Description	E-value	Query Range	Subject Range
gi\|114332698, gi... - gi\|69950004\|ref\|ZP_00637936.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	283.0	[0..2]	[437..4]
gi\|91794886, gi\|... - gi\|91794886\|ref\|YP_564537.1\| osmolarity sensor protein [Shewanella denitrificans OS217], gi\|91716888...	273.0	[0..1]	[437..1]
gi\|78684473, gi\|... - gi\|78684473\|ref\|ZP_00849257.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	271.0	[0..1]	[438..1]
gi\|146294928, gi... - gi\|77814459\|ref\|ZP_00813718.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	271.0	[0..1]	[438..1]
gi\|82721469, gi\|... - gi\|82741200\|ref\|ZP_00903927.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	271.0	[0..1]	[438..1]
gi\|78689934, gi\|... - gi\|78689934\|ref\|ZP_00854589.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	268.0	[0..1]	[438..1]
gi\|113972139, gi... - gi\|82496220\|ref\|ZP_00881790.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	268.0	[0..1]	[438..1]
gi\|78361924, gi\|... - gi\|78366023\|ref\|ZP_00836306.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	267.0	[0..3]	[438..1]
gi\|160877441, gi... - gi\|160877441\|ref\|YP_001556757.1\| osmolarity sensor protein [Shewanella baltica OS195], gi\|160862963\|...	259.0	[0..10]	[438..1]
gi\|68545092, gi\|... - gi\|68545092\|ref\|ZP_00584643.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	252.0	[0..1]	[438..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKWWQRLL PRSAFSQTVL LIGCLLLINQ LVSYVTVAVY VLKPSYQQIN QLIARQINLL  60
   61 FVDGIDIGRE HLTIVDALNA KVRDDGMKVY NQQQAREAGI EQATYYGFWS SQMTEYLGGD 120
  121 AEVRVTHGRV LQVWIRPPQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [140-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APSVWIKVPL IGQNVSDLSP LTLYLMVIGA LSVAGGWWFA RQQNRPLRRL QKAAISVSRG  60
   61 EFPDPLPLKG SSELVEVTNA FNQM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.2
Match:	2f95B
Description:	M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [224-438]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AHSMKQLEQD RALLMAGISH DLRTPLTRIR LASEMMVEDD QYLKDGIVND IEDMDAIISQ  60
   61 FIAYIRQDQE ASREPGQINK LIQDIAQAEA NRDGEIELAL ADCPEALFQG LAIKRVLSNL 120
  121 VENAFRYGSG WVRISSQFDG KRIGFSVEDN GPGIDESQIP TLFQPFTQGD IARGSVGSGL 180
  181 GLAIIKRIID RHQGQITLSN RAAGGLKAQV WLPRE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.0
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits