YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24351124, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	413 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24351124, gi|....

Description	E-value	Query Range	Subject Range
gi\|166853488, gi... - gi\|167039248\|ref\|YP_001662233.1\| integral membrane sensor signal transduction histidine kinase [Ther... gi\|241904558, gi... - gi\|241904558\|ref\|ZP_04789245.1\| histidine kinase [Thermoanaerobacter brockii subsp. finnii Ako-1], g... gi\|76588655, gi\|... - gi\|76795887\|ref\|ZP_00778257.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	209.0	[0..53]	[410..75]
gi\|20808918 - gi\|20808918\|ref\|NP_624089.1\| Sensory transduction histidine kinase [Thermoanaerobacter tengcongensis... gi\|20808918, gi\|... - gi\|20808918\|ref\|NP_624089.1\| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis...	207.0	[0..1]	[411..1]
gi\|45358866, gi\|... - gi\|45358866\|ref\|NP_988423.1\| sensory transduction histidine kinase [Methanococcus maripaludis S2], g...	205.0	[0..130]	[413..296]
gi\|254750825 - gi\|254750825\|ref\|ZP_05202864.1\| sensor histidine kinase [Bacillus anthracis str. Vollum] gi\|254741274 - gi\|254741274\|ref\|ZP_05198962.1\| sensor histidine kinase [Bacillus anthracis str. Kruger B] gi\|254721328 - gi\|254721328\|ref\|ZP_05183118.1\| sensor histidine kinase [Bacillus anthracis str. A1055] gi\|49178772, gi\|... - gi\|49184845\|ref\|YP_028097.1\| sensor histidine kinase [Bacillus anthracis str. Sterne], gi\|49178772\|g... gi\|47527271, gi\|... - gi\|47527271\|ref\|YP_018620.1\| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'], gi\|4... gi\|30262005, gi\|... - gi\|30262005\|ref\|NP_844382.1\| sensor histidine kinase [Bacillus anthracis str. Ames], gi\|30256631\|gb\|... gi\|49477455, gi\|... - gi\|49477455\|ref\|YP_036139.1\| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. ... gi\|254684570 - gi\|254684570\|ref\|ZP_05148430.1\| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066] gi\|195990438, gi... - gi\|196036949\|ref\|ZP_03104328.1\| sensor histidine kinase [Bacillus cereus W], gi\|195990438\|gb\|EDX5442...	197.0	[0..8]	[411..1]
gi\|51976913, gi\|... - gi\|52143444\|ref\|YP_083385.1\| sensor histidine kinase [Bacillus cereus E33L], gi\|51976913\|gb\|AAU18463...	196.0	[0..8]	[411..1]
gi\|46113643, gi\|... - gi\|68054670\|ref\|ZP_00538820.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	195.0	[0..5]	[411..4]
gi\|91203275 - gi\|91203275\|emb\|CAJ72914.1\| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]	195.0	[0..110]	[411..162]
gi\|46908753, gi\|... - gi\|46908753\|ref\|YP_015142.1\| sensor histidine kinase [Listeria monocytogenes str. 4b F2365], gi\|4688... gi\|47094035, gi\|... - gi\|47094035\|ref\|ZP_00231765.1\| sensor histidine kinase [Listeria monocytogenes str. 4b H7858], gi\|47...	194.0	[0..8]	[413..1]
gi\|47553480, gi\|... - gi\|47569834\|ref\|ZP_00240503.1\| sensor histidine kinase, putative [Bacillus cereus G9241], gi\|4755348...	194.0	[0..8]	[411..1]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAPKFSLKR SYQVWGVFFL LITLGVNSFI PLCMMCAGMI SMHEVTMHNA GQAAEALLKV  60
   61 AQPTQQPLQQ PILKTDNLTV YPHWLDIPPH IRELSNNEVL TDASKIRYEH AEGPIVNALS 120
  121 VYYTQAGQPL YVWLQFSVTH DLHFAPKNMT AILLLVLITF CASASLAFYM QSKVITPVHQ 180
  181 ISQAIKQHDW EAGGQLSLPQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [201-413]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQYAELKAIV DALDYSILQL QEAQQRELNF LRFASHELRT PVAICQSSFE ILALQQGELT  60
   61 GATLYASQAT NQMKSLIETL LWLTNKECSS LEKENVALSP LLACIIEEQQ RVHGHEQKIQ 120
  121 LFSDDTCLPI QLHPLKIILS NLLRNSIEHG GRDIRITQDA CCIEITNSYN SKGRHGFGLG 180
  181 LLLVKRLANQ LGWFFTSSSE NNLFTARLEI SNS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits