YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24351124, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	413 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24351124, gi|....

Description	E-value	Query Range	Subject Range
gi\|166853488, gi... - gi\|167039248\|ref\|YP_001662233.1\| integral membrane sensor signal transduction histidine kinase [Ther... gi\|241904558, gi... - gi\|241904558\|ref\|ZP_04789245.1\| histidine kinase [Thermoanaerobacter brockii subsp. finnii Ako-1], g... gi\|76588655, gi\|... - gi\|76795887\|ref\|ZP_00778257.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	209.0	[0..53]	[410..75]
gi\|20808918 - gi\|20808918\|ref\|NP_624089.1\| Sensory transduction histidine kinase [Thermoanaerobacter tengcongensis... gi\|20808918, gi\|... - gi\|20808918\|ref\|NP_624089.1\| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis...	207.0	[0..1]	[411..1]
gi\|45358866, gi\|... - gi\|45358866\|ref\|NP_988423.1\| sensory transduction histidine kinase [Methanococcus maripaludis S2], g...	205.0	[0..130]	[413..296]
gi\|254750825 - gi\|254750825\|ref\|ZP_05202864.1\| sensor histidine kinase [Bacillus anthracis str. Vollum] gi\|254741274 - gi\|254741274\|ref\|ZP_05198962.1\| sensor histidine kinase [Bacillus anthracis str. Kruger B] gi\|254721328 - gi\|254721328\|ref\|ZP_05183118.1\| sensor histidine kinase [Bacillus anthracis str. A1055] gi\|49178772, gi\|... - gi\|49184845\|ref\|YP_028097.1\| sensor histidine kinase [Bacillus anthracis str. Sterne], gi\|49178772\|g... gi\|47527271, gi\|... - gi\|47527271\|ref\|YP_018620.1\| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'], gi\|4... gi\|30262005, gi\|... - gi\|30262005\|ref\|NP_844382.1\| sensor histidine kinase [Bacillus anthracis str. Ames], gi\|30256631\|gb\|... gi\|49477455, gi\|... - gi\|49477455\|ref\|YP_036139.1\| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. ... gi\|254684570 - gi\|254684570\|ref\|ZP_05148430.1\| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066] gi\|195990438, gi... - gi\|196036949\|ref\|ZP_03104328.1\| sensor histidine kinase [Bacillus cereus W], gi\|195990438\|gb\|EDX5442...	197.0	[0..8]	[411..1]
gi\|51976913, gi\|... - gi\|52143444\|ref\|YP_083385.1\| sensor histidine kinase [Bacillus cereus E33L], gi\|51976913\|gb\|AAU18463...	196.0	[0..8]	[411..1]
gi\|46113643, gi\|... - gi\|68054670\|ref\|ZP_00538820.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	195.0	[0..5]	[411..4]
gi\|91203275 - gi\|91203275\|emb\|CAJ72914.1\| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]	195.0	[0..110]	[411..162]
gi\|46908753, gi\|... - gi\|46908753\|ref\|YP_015142.1\| sensor histidine kinase [Listeria monocytogenes str. 4b F2365], gi\|4688... gi\|47094035, gi\|... - gi\|47094035\|ref\|ZP_00231765.1\| sensor histidine kinase [Listeria monocytogenes str. 4b H7858], gi\|47...	194.0	[0..8]	[413..1]
gi\|47553480, gi\|... - gi\|47569834\|ref\|ZP_00240503.1\| sensor histidine kinase, putative [Bacillus cereus G9241], gi\|4755348...	194.0	[0..8]	[411..1]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAPKFSLKR SYQVWGVFFL LITLGVNSFI PLCMMCAGMI SMHEVTMHNA GQAAEALLKV  60
   61 AQPTQQPLQQ PILKTDNLTV YPHWLDIPPH IRELSNNEVL TDASKIRYEH AEGPIVNALS 120
  121 VYYTQAGQPL YVWLQFSVTH DLHFAPKNMT AILLLVLITF CASASLAFYM QSKVITPVHQ 180
  181 ISQAIKQHDW EAGGQLSLPQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [201-413]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQYAELKAIV DALDYSILQL QEAQQRELNF LRFASHELRT PVAICQSSFE ILALQQGELT  60
   61 GATLYASQAT NQMKSLIETL LWLTNKECSS LEKENVALSP LLACIIEEQQ RVHGHEQKIQ 120
  121 LFSDDTCLPI QLHPLKIILS NLLRNSIEHG GRDIRITQDA CCIEITNSYN SKGRHGFGLG 180
  181 LLLVKRLANQ LGWFFTSSSE NNLFTARLEI SNS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits