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View Structure Prediction Details

Protein: gi|24375958, gi|...
Organism: Shewanella oneidensis MR-1
Length: 506 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375958, gi|....

Description E-value Query
Range
Subject
Range
gi|56421733, gi|... - gi|56421733|ref|YP_149051.1| NAD-dependent aldehyde dehydrogenase [Geobacillus kaustophilus HTA426],...
593.0 [0..1] [506..1]
gi|91769337, gi|... - gi|91769337|ref|ZP_01271171.1| Aldehyde dehydrogenase (NAD+) [Psychrobacter sp. PRwf-1], gi|91721717...
585.0 [0..1] [506..1]
gi|172057725, gi... - gi|68054027|ref|ZP_00538192.1| Aldehyde dehydrogenase (NAD+) [Exiguobacterium sibiricum 255-15], gi|...
583.0 [0..1] [506..1]
AL1A1_SHEEP - Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2
583.0 [0..2] [501..3]
gi|28898477, gi|... - gi|28898477|ref|NP_798082.1| aldehyde dehydrogenase [Vibrio parahaemolyticus RIMD 2210633], gi|28806...
gi|28806695 - gi|28806695|dbj|BAC59966.1| aldehyde dehydrogenase [Vibrio parahaemolyticus RIMD 2210633]
gi|149750472, gi... - gi|153836197|ref|ZP_01988864.1| aldehyde dehydrogenase (NAD) family protein [Vibrio parahaemolyticus...
581.0 [0..1] [506..1]
AL1A1_BOVIN - Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3
581.0 [0..2] [501..3]
gi|91224442, gi|... - gi|91224442|ref|ZP_01259704.1| aldehyde dehydrogenase [Vibrio alginolyticus 12G01], gi|91190784|gb|E...
581.0 [0..1] [506..1]
gi|116186935, gi... - gi|75857696|ref|ZP_00765309.1| COG1012: NAD-dependent aldehyde dehydrogenases [Vibrio sp. Ex25], gi|...
581.0 [0..1] [506..1]
gi|82495488, gi|... - gi|82495488|ref|ZP_00881063.1| Aldehyde dehydrogenase (NAD+) [Shewanella sp. MR-4], gi|82406372|gb|E...
gi|78508712, gi|... - gi|78691877|ref|ZP_00856466.1| Aldehyde dehydrogenase (NAD+) [Shewanella sp. MR-7], gi|78508712|gb|E...
581.0 [0..1] [506..1]
gi|78505015, gi|... - gi|78687270|ref|ZP_00852023.1| Aldehyde dehydrogenase (NAD+) [Shewanella sp. ANA-3], gi|78505015|gb|...
579.0 [0..1] [506..1]

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Predicted Domain #1
Region A:
Residues: [1-506]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYAQPGTAG ALVNFKEKYA NFIGGKWVAP VNGKYFDNRS PVNGQNFCKI PRSDAQDIEL  60
   61 ALDAAHAAKD AWGKTSVTER SNILLRIADR VEQNLEYLAV AETWENGKAV RETLNADLPL 120
  121 FVDHFRYFAG CIRAQEGSAA DIDGNTVSYH FPEPLGVVGQ IIPWNFPLLM AAWKIAPALA 180
  181 AGNCVVLKPA EQTPVSILVL LELIEDLLPP GVLNVVNGFG AEAGQALATS KRIAKLAFTG 240
  241 STEVGFHILK CAAESLIPST VELGGKSPNL YFADVMDQED EYLDKAVEGM LLAFFNQGEV 300
  301 CTCPSRVLIQ ESIYDRFIEK VLARAQTIKQ GNPLDTATQV GAQASQEQFD KILSYLAIGK 360
  361 DEGAQVLLGG SLCQLEGEQS KGYYISPTIM KGHNKMRIFQ EEIFGPVISV TTFKDEAEAL 420
  421 AIANDTEYGL GAGVWTRDMN RAQRMGRGIQ AGRVWINCYH AYPAHAAFGG YKKSGIGRET 480
  481 HKMMLNHYQN TKNLLVSYDI NPLGFF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 167.0
Match: 1bxsA
Description: Aldehyde reductase (dehydrogenase), ALDH
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on the aldehyde or oxo group of donors 5.09598561374689 bayes_pls_golite062009
oxidoreductase activity 4.47226217021998 bayes_pls_golite062009
1-pyrroline-5-carboxylate dehydrogenase activity 4.35175408702761 bayes_pls_golite062009
malonate-semialdehyde dehydrogenase (acetylating) activity 4.2273960318884 bayes_pls_golite062009
methylmalonate-semialdehyde dehydrogenase (acylating) activity 3.87605237828483 bayes_pls_golite062009
succinate-semialdehyde dehydrogenase [NAD(P)+] activity 3.64672165191647 bayes_pls_golite062009
3-chloroallyl aldehyde dehydrogenase activity 3.37049090049734 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 3.2867555127991 bayes_pls_golite062009
glutamate-5-semialdehyde dehydrogenase activity 3.27180265380824 bayes_pls_golite062009
benzaldehyde dehydrogenase activity 2.99564252244797 bayes_pls_golite062009
aldehyde dehydrogenase (NAD) activity 2.81851373615334 bayes_pls_golite062009
catalytic activity 2.80804701752928 bayes_pls_golite062009
succinate-semialdehyde dehydrogenase activity 2.71501590413507 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors 2.70230501280821 bayes_pls_golite062009
aldehyde dehydrogenase [NAD(P)+] activity 2.43250909158896 bayes_pls_golite062009
aminobutyraldehyde dehydrogenase activity 2.35958138496479 bayes_pls_golite062009
acyl-CoA binding 2.26220696569489 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor 1.6559690223037 bayes_pls_golite062009
retinal dehydrogenase activity 1.42867174920845 bayes_pls_golite062009
binding 1.06673666884196 bayes_pls_golite062009
retinoid binding 0.983782635681687 bayes_pls_golite062009
isoprenoid binding 0.900374761028287 bayes_pls_golite062009
protein binding 0.894945263794726 bayes_pls_golite062009
histidinol dehydrogenase activity 0.258030369394064 bayes_pls_golite062009
benzaldehyde dehydrogenase (NAD+) activity 0.23487570676521 bayes_pls_golite062009

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Created and Maintained by: Michael Riffle