| Protein: | gi|24375923, gi|... |
| Organism: | Shewanella oneidensis MR-1 |
| Length: | 1141 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375923, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
580.0 | [0..23] | [1128..318] |
|
|
533.0 | [0..6] | [1125..285] |
|
|
521.0 | [0..9] | [1120..8] |
|
|
464.0 | [0..23] | [1141..415] |
|
|
452.0 | [0..4] | [1028..12] |
|
|
442.0 | [0..311] | [1130..88] |
|
|
440.0 | [0..23] | [1141..421] |
|
|
437.0 | [0..21] | [1103..288] |
|
|
437.0 | [0..8] | [874..27] |
|
|
435.0 | [0..52] | [1136..77] |
|
Region A: Residues: [1-295] |
1 11 21 31 41 51
| | | | | |
1 MSAIQKIRYQ LLCILSYLPL LCMTFITHAE QPNTTTISVG VLANGWGPFQ QVNDQITTGF 60
61 SVELIQLLAK NLHYQIDWKI YPDWMSLYSA GCNGEVDVLL DAFRTTERTQ CLMFSRSYYT 120
121 SPTVVVIRYD SRFFRDVSEF GQARIAVEKG FSTEKLVKLH YPTVTEVTFS NTEQALSSVI 180
181 DKTTDAYIGN LHVANQYISA HPELLIVAQA PLMMENLHLG ITKNNSLLVT QLDNALMALS 240
241 VEERNALEVT WLGMGDLHFL GHSNFLLRPN EREWLAGLPS LRVGFVDDWM PFSSV
|
| Detection Method: |  |
| Confidence: | 30.221849 |
| Match: | 2ia4A |
| Description: | No description for 2ia4A was found. |
|
Region A: Residues: [296-505] |
1 11 21 31 41 51
| | | | | |
1 NNNGILVGLI ADYLEQFREK LGLDYAAQKT RTWNEIQSAL INHEIDLAII PTRLKAQYPD 60
61 WHMSEVFTSF PIVIATARNS PRIAGLSELN FQRVVITDNL LLPSIKKAYP NIDVVVSANP 120
121 DEGLTLVAKG NAAAYMGNLA VVAMLIDNKF IDELRVAAPT PYKDELAVAI REPYWQLIPL 180
181 INRVFSSMSE KEKQQIRNTW LAVNYSEGIS
|
| Detection Method: | |
| Confidence: | 7.22 |
| Match: | 1gggA |
| Description: | Glutamine-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.22974981386189 | bayes_pls_golite062009 |
| transcription regulator activity | 0.16461666107495 | bayes_pls_golite062009 |
|
Region A: Residues: [506-795] |
1 11 21 31 41 51
| | | | | |
1 WHTLITTLLP IAIGLLLFIG GLTIAYLKLR QEINKRRIVE NALAIAKENA ELATKRKAEF 60
61 LAAMSHEIRT PMNGLVGMAE QLSFTPLGIE QKQMVQIISN GAEEILQIIN NILDFSKIDM 120
121 GKMRLESTPI LLREVLDSTL NMVMNDLRTK DLSLYLHVDQ GVAARVTGDS LRIKQILFNW 180
181 VSNAIKFTER GFIEVSVKLE AEEEGQQLLL IGVQDTGIGM NADTQARIFN IFEQADVSTT 240
241 RSYGGAGLGL AISHTLAEMM GGDIILNSAP HLGTFIGLRI RLPVVAQDEF
|
| Detection Method: | |
| Confidence: | 53.045757 |
| Match: | 2c2aA |
| Description: | Structure of the entire cytoplasmic portion of a sensor histidine kinase protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [796-894] |
1 11 21 31 41 51
| | | | | |
1 DEQLQGLQAY IAISDIKLRH TLSWHLASLG IVLTQNKANA DLLFTDNASD DRQHILCTHF 60
61 NEALGYRYQN DQCLLNVNPL TSQAVKDVCY INMGWIDTI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.461 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.490 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.433 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.349 | a.118.8 | TPR-like |
| View | Download | 0.375 | d.79.5 | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF |
|
Region A: Residues: [895-1141] |
1 11 21 31 41 51
| | | | | |
1 VSTPQRDITL KVNWPECKIL LIEDHQLNQI LVQRQLKQLR LDCDIAEHGV QALDLMQQTH 60
61 YDLILCDCRM PVMDGYTFTQ QVRAQEIDGQ HVPIIALTAN VLNEQKQRCA AVEMDDLLAK 120
121 PLHLNELHEM LLKWLPHSKP ALIDIKILEN AFGRREALSK MLLMFKDELE SSLKDIQLTA 180
181 PQLADNIHRT AGTISMLGLT SIAEQAWLLE EKIRQEDSNN GEVELTEFRA IIIQLISELN 240
241 AIIHTSN
|
| Detection Method: | |
| Confidence: | 51.0 |
| Match: | 2oqrA |
| Description: | No description for 2oqrA was found. |
