YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375854, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	594 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375854, gi|....

Description	E-value	Query Range	Subject Range
gi\|78690025, gi\|... - gi\|78690025\|ref\|ZP_00854678.1\| glycosyl transferase, group 2 family protein [Shewanella sp. MR-7], g...	371.0	[0..1]	[594..17]
gi\|78685967, gi\|... - gi\|78685967\|ref\|ZP_00850740.1\| glycosyl transferase, group 2 family protein [Shewanella sp. ANA-3], ...	369.0	[0..1]	[594..13]
gi\|82406466, gi\|... - gi\|82495582\|ref\|ZP_00881157.1\| glycosyl transferase, group 2 family protein [Shewanella sp. MR-4], g...	367.0	[0..1]	[594..17]
gi\|114561535, gi... - gi\|69950126\|ref\|ZP_00638058.1\| Glycosyl transferase, family 2 [Shewanella frigidimarina NCIMB 400], ...	336.0	[0..6]	[591..1]
gi\|115358353, gi... - gi\|115358353\|ref\|YP_775491.1\| glycosyl transferase family protein [Burkholderia ambifaria AMMD], gi\|...	336.0	[0..9]	[573..5]
gi\|160858989, gi... - gi\|160873467\|ref\|YP_001552783.1\| glycosyl transferase family protein [Shewanella baltica OS195], gi\|...	334.0	[0..3]	[593..11]
gi\|120597126, gi... - gi\|82742643\|ref\|ZP_00905328.1\| glycosyl transferase, group 2 family protein [Shewanella sp. W3-18-1]...	334.0	[0..3]	[593..11]
gi\|145563238, gi... - gi\|77814591\|ref\|ZP_00813849.1\| Glycosyl transferase, family 2 [Shewanella putrefaciens CN-32], gi\|77...	334.0	[0..3]	[593..11]
gi\|78361054, gi\|... - gi\|78366917\|ref\|ZP_00837193.1\| Glycosyl transferase, family 2 [Shewanella sp. PV-4], gi\|78361054\|gb\|...	332.0	[0..6]	[578..1]
gi\|89076451, gi\|... - gi\|89076451\|ref\|ZP_01162771.1\| hypothetical protein SKA34_07583 [Photobacterium sp. SKA34], gi\|89047...	330.0	[0..1]	[563..1]

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Predicted Domain #1

Region A:
Residues: [1-322]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPVPIKLAL VIPNYNHSAA ISQALSELAA LNLPCYLIDD GSNDETRYLL QSLAEQHDWV  60
   61 TLLQHPYNRG KGAAVMTGLR SAYRDGFTHA LQVDADGQHN LSDIPAMLAK AQAKPDALIS 120
  121 GKPEYDKSVP KGRLYGRYLT HFWVWVETLS FDIQDSMCGF RVYPLAATER LFSKQALTER 180
  181 MDFDIEILVK LYWQGVEILF HPTKVIYPEN GVSHFQCVAD NVRISKLHTR LFFGMLKRLP 240
  241 QLLRRKQAAK STSSAHTATH WSAMKERGSY WGIKLLVESY RFGGHWLCRA IMYPVICYFF 300
  301 LTGKVSREAS RDFLRRVQHL EP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	1xhbA
Description:	The Crystal Structure of UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase-T1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring hexosyl groups	2.1118093316982	bayes_pls_golite062009
catalytic activity	1.88676710996045	bayes_pls_golite062009
UDP-glycosyltransferase activity	1.67503629152615	bayes_pls_golite062009
transferase activity	1.39859835180302	bayes_pls_golite062009
cytidylyltransferase activity	1.14240569193314	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.897978517422275	bayes_pls_golite062009
acetylgalactosaminyltransferase activity	0.644929907025935	bayes_pls_golite062009
nucleotidyltransferase activity	0.611019346919185	bayes_pls_golite062009
UDP-N-acetylglucosamine diphosphorylase activity	0.412018910498896	bayes_pls_golite062009
polypeptide N-acetylgalactosaminyltransferase activity	0.340417285792894	bayes_pls_golite062009
uridylyltransferase activity	0.321928989676507	bayes_pls_golite062009
mannose-phosphate guanylyltransferase activity	0.2363835251362	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.14266785040628	bayes_pls_golite062009
guanylyltransferase activity	0.0539392112504681	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [323-594]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QHPQLNQPVG WRDSLNHFIA FGNAALDRID AWCDRIQLSQ VDFPDRQVLA DQLESGKGAV  60
   61 LLVSHLGNLE LCRAISIHQR KVKVNVMVLT SHAENFNNVL KQLNPNSSLN LIQVTELNPA 120
  121 TSMLLQQKIE DGELVVIAGD RTSSHAQGRV VYAPFMGQDA AFPQGPFILA GLLDCPVYLM 180
  181 FCLREQGRYR VHLERFAETL KGPRAGRMER LQQAVYRYSE RLEHYARREP LQWFNFFDFW 240
  241 RDDNQVNRAT SAHKTTAALP EQERTTDRTE HL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.97
Match:	1k30A
Description:	Glycerol-3-phosphate (1)-acyltransferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: