YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375791, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	414 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375791, gi|....

Description	E-value	Query Range	Subject Range
gi\|69949886, gi\|... - gi\|69949886\|ref\|ZP_00637850.1\| Diaminopimelate decarboxylase [Shewanella frigidimarina NCIMB 400], g...	393.0	[0..1]	[414..1]
gi\|68347595, gi\|... - gi\|70733296\|ref\|YP_263070.1\| diaminopimelate decarboxylase [Pseudomonas fluorescens Pf-5], gi\|683475...	391.0	[0..1]	[414..1]
gi\|78691567, gi\|... - gi\|78691567\|ref\|ZP_00856176.1\| Diaminopimelate decarboxylase [Shewanella sp. MR-7], gi\|78509028\|gb\|E...	390.0	[0..1]	[414..1]
gi\|28850691, gi\|... - gi\|28867457\|ref\|NP_790076.1\| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato str. DC3... tr\|Q88B08\|Q88B08... - Diaminopimelate decarboxylase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=lsyA-2 PE=3 SV=1	390.0	[0..1]	[414..1]
gi\|113883419, gi... - gi\|82497210\|ref\|ZP_00882768.1\| Diaminopimelate decarboxylase [Shewanella sp. MR-4], gi\|82404799\|gb\|E...	390.0	[0..1]	[414..1]
gi\|95113254 - gi\|95113254\|emb\|CAK17982.1\| diaminopimelate decarboxylase [Pseudomonas entomophila L48] gi\|95113254, gi\|... - gi\|95113254\|emb\|CAK17982.1\| diaminopimelate decarboxylase [Pseudomonas entomophila L48], gi\|10478426...	390.0	[0..1]	[414..1]
gi\|71738109, gi\|... - gi\|71738109\|ref\|YP_277093.1\| diaminopimelate decarboxylase [Pseudomonas syringae pv. phaseolicola 14...	390.0	[0..1]	[414..1]
gi\|78686155, gi\|... - gi\|78686155\|ref\|ZP_00850926.1\| Diaminopimelate decarboxylase [Shewanella sp. ANA-3], gi\|78506119\|gb\|...	388.0	[0..1]	[414..1]
gi\|82716207, gi\|... - gi\|82736731\|ref\|ZP_00899587.1\| Diaminopimelate decarboxylase [Pseudomonas putida F1], gi\|82716207\|gb...	388.0	[0..1]	[414..1]
gi\|63254159, gi\|... - gi\|66043452\|ref\|YP_233293.1\| diaminopimelate decarboxylase [Pseudomonas syringae pv. syringae B728a]...	388.0	[0..1]	[414..1]

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Predicted Domain #1

Region A:
Residues: [1-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHFLYQDNT LYAEGCRVND LAQTYGTPLY IYSRATLERH WHAFNNAVAG HPHLVCYAVK  60
   61 ANSNLAVLNV LARLGSGFDI VSGGELARVI EAGGDPAKVV FSGVGKTVAE MEQALNLGIY 120
  121 CFNVESSAEL EQLNLVAGRL GKVAPVSLRV NPDVDAGTHP YISTGLKENK FGIAMDEAEA 180
  181 VFARAHALPH LQVKGVDCHI GSQLTEIQPF LDAMDRMLSL IDRLAEQGIV IEHFDVGGGL 240
  241 GVTYDDETPP HPDVYAAALL KRLGHRKLKL IFEPGRAIAA NAGIFVTEVL YLKENSDKRF 300
  301 AIVDGAMNDL IRPALYSAWQ KIIPVTPRDD QAHVFDIVGP VCETGDFLGK DREFAIAPGD 360
  361 LLVVRSSGAY GFAMASNYNT RPRAAEVMVD GDKAYLVRER EKLPQLWQGE QLLP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	97.522879
Match:	2p3eA
Description:	No description for 2p3eA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits