| Protein: | gi|24350652, gi|... |
| Organism: | Shewanella oneidensis MR-1 |
| Length: | 437 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350652, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
260.0 | [0..3] | [437..2] |
|
|
249.0 | [0..5] | [437..9] |
|
Region A: Residues: [1-437] |
1 11 21 31 41 51
| | | | | |
1 MQKRLLTLAV TAALLSTTTQ VHAAGFQLAE YSATGLGRAF AGEAAMADNA SAQFRNPAML 60
61 TYLTGTQMTT GAILVMPNID VEGEVTVGNV TQATAAKDMA GNAVIPNFYV SHQLNQQWFI 120
121 GVALGTNFGM ATELDDDFLG SQFGNEASIK AIEINPNVAY RINEQLSVGG GVRLVLGEGS 180
181 IGAKSSADAV LPTPIGNLPV PKGTTLKYME GDDISWGWQL GGAWQINADH RIGLNYRSAV 240
241 DQRLEGEANG LAFNPLAPNQ KLAGSMELSL PATVELASFH QLTPQLAVHA SVNWTDWSSF 300
301 EKLEAVIPSL KVPTQLVKQE NWEDSYRFAL GATYRLDDQS SLRAGVAYDM SAVSDANRTL 360
361 TIPEMNRVWL SAGYGYQFSK QLDLDFGVTY IIADESPVVE PRPGIDSDNS AALFGGTFSG 420
421 TTSGNILLFG VQASYRF
|
| Detection Method: |  |
| Confidence: | 50.522879 |
| Match: | 1t16A |
| Description: | Crystal structure of the bacterial fatty acid transporter FadL from Escherichia coli |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transporter activity | 4.15398171369398 | bayes_pls_golite062009 |
| lipid transporter activity | 3.80341435685844 | bayes_pls_golite062009 |
| long-chain fatty acid transporter activity | 3.64136299874986 | bayes_pls_golite062009 |
| fatty acid transporter activity | 3.42515380308484 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 2.43332676180972 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.99898520864149 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 1.37880749517427 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.9810521942815 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.89213734347785 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 0.70757821289609 | bayes_pls_golite062009 |
| binding | 0.643879907209189 | bayes_pls_golite062009 |
| inorganic cation transmembrane transporter activity | 0.60516455096546 | bayes_pls_golite062009 |
| di-, tri-valent inorganic cation transmembrane transporter activity | 0.17491456011246 | bayes_pls_golite062009 |
| protein binding | 0.0112080975548029 | bayes_pls_golite062009 |
