YRC Public Data Repository - Protein Structure Prediction

Protein:	LPXC_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	306 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LPXC_SHEON.

Description	E-value	Query Range	Subject Range
LPXC_HAES1 - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Haemophilus somnus (strain 129Pt) GN=lpxC PE=3 SV=1	518.0	[0..1]	[303..1]
LPXC_HISS2 - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Histophilus somni (strain 2336) GN=lpxC PE=3 SV=1	517.0	[0..1]	[303..1]
LPXC_PASMU - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase OS=Pasteurella multocida GN=lpxC PE=3 S... LPXC_PASMU - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Pasteurella multocida (strain Pm70) GN=lpxC PE=3 SV=...	516.0	[0..1]	[304..1]
LPXC_HAEI8 - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Haemophilus influenzae (strain 86-028NP) GN=lpxC PE=...	515.0	[0..1]	[304..1]
gi\|150260404, gi... - gi\|150260404\|ref\|ZP_01917132.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersin... gi\|145600336, gi... - gi\|145600336\|ref\|YP_001164412.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersi... gi\|167426450, gi... - gi\|167426450\|ref\|ZP_02318203.1\| UDP-3-0-acyl N-acetylglucosamine deacetylase [Yersinia pestis biovar... gi\|167421900, gi... - gi\|167421900\|ref\|ZP_02313653.1\| UDP-3-0-acyl N-acetylglucosamine deacetylase [Yersinia pestis biovar... gi\|22127494, gi\|... - gi\|22127494\|ref\|NP_670917.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersinia ... gi\|25300229 - gi\|25300229\|pir\|\|AF0069 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-) [i... gi\|115346368, gi... - gi\|16120889\|ref\|NP_404202.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersinia ... gi\|108810592, gi... - gi\|108810592\|ref\|YP_646359.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersinia... gi\|45438224, gi\|... - gi\|45443355\|ref\|NP_994894.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersinia ... gi\|108809531, gi... - gi\|108809531\|ref\|YP_653447.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersinia... gi\|165928192, gi... - gi\|165928192\|ref\|ZP_02224024.1\| UDP-3-0-acyl N-acetylglucosamine deacetylase [Yersinia pestis biovar... gi\|162419483, gi... - gi\|162419483\|ref\|YP_001607290.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersi... gi\|167401283, gi... - gi\|167401283\|ref\|ZP_02306783.1\| UDP-3-0-acyl N-acetylglucosamine deacetylase [Yersinia pestis biovar... gi\|166211861, gi... - gi\|166211861\|ref\|ZP_02237896.1\| UDP-3-0-acyl N-acetylglucosamine deacetylase [Yersinia pestis biovar... gi\|166008906, gi... - gi\|166008906\|ref\|ZP_02229804.1\| UDP-3-0-acyl N-acetylglucosamine deacetylase [Yersinia pestis biovar... gi\|165914225, gi... - gi\|165937813\|ref\|ZP_02226374.1\| UDP-3-0-acyl N-acetylglucosamine deacetylase [Yersinia pestis biovar...	514.0	[0..1]	[304..6]
gi\|42631446 - gi\|42631446\|ref\|ZP_00156984.1\| COG0774: UDP-3-O-acyl-N-acetylglucosamine deacetylase [Haemophilus in... gi\|145271639, gi... - gi\|145639336\|ref\|ZP_01794942.1\| hypothetical protein CGSHiII_01259 [Haemophilus influenzae PittII], ... gi\|144979661, gi... - gi\|145627886\|ref\|ZP_01783687.1\| hypothetical protein CGSHi22121_02575 [Haemophilus influenzae 22.1-2...	514.0	[0..1]	[304..1]
gi\|89102558 - gi\|89102558\|ref\|ZP_01175182.1\| COG0774: UDP-3-O-acyl-N-acetylglucosamine deacetylase [Yersinia pesti... gi\|51595044, gi\|... - gi\|51595044\|ref\|YP_069235.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersinia ... gi\|77631674, gi\|... - gi\|77631674\|ref\|ZP_00794260.1\| COG0774: UDP-3-O-acyl-N-acetylglucosamine deacetylase [Yersinia pseud... gi\|169752261, gi... - gi\|170025727\|ref\|YP_001722232.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersi... gi\|77633649 - gi\|77633649\|ref\|ZP_00795771.1\| COG0774: UDP-3-O-acyl-N-acetylglucosamine deacetylase [Yersinia pesti... gi\|186697076, gi... - gi\|186894050\|ref\|YP_001871162.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersi...	513.0	[0..1]	[304..2]
gi\|229705991, gi... - gi\|229837048\|ref\|ZP_04457213.1\| UDP-3-O-acyl N-acetylglucosamine deacetylase [Yersinia pestis Pestoi... gi\|161484749 - gi\|161484749\|ref\|NP_670917.2\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersinia... gi\|229840449, gi... - gi\|229840449\|ref\|ZP_04460608.1\| UDP-3-O-acyl N-acetylglucosamine deacetylase [Yersinia pestis biovar... LPXC_YERPS - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase OS=Yersinia pseudotuberculosis GN=lpxC ... gi\|161511303 - gi\|161511303\|ref\|NP_994894.2\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersinia... gi\|218927757 - gi\|218927757\|ref\|YP_002345632.1\| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Yersi... gi\|229689885, gi... - gi\|229843009\|ref\|ZP_04463159.1\| UDP-3-O-acyl N-acetylglucosamine deacetylase [Yersinia pestis biovar... gi\|229682123, gi... - gi\|229900784\|ref\|ZP_04515908.1\| UDP-3-O-acyl N-acetylglucosamine deacetylase [Yersinia pestis Nepal5... LPXC_YERP3 - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP... LPXC_YERPE - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Yersinia pestis GN=lpxC PE=3 SV=2 LPXC_YERPS - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Yersinia pseudotuberculosis serotype I (strain IP329...	513.0	[0..1]	[304..1]
LPXC_HAEIN - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase OS=Haemophilus influenzae GN=lpxC PE=3 ... LPXC_HAEIN - UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 1112...	513.0	[0..1]	[304..1]
gi\|46129001 - gi\|46129001\|ref\|ZP_00155594.2\| COG0774: UDP-3-O-acyl-N-acetylglucosamine deacetylase [Haemophilus in...	511.0	[0..1]	[304..1]

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Predicted Domain #1

Region A:
Residues: [1-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFQRTVQKM VKATGVGLHS GNKVTLSIMP APVNTGIVLV RTDMSPAVAI PAKAEQVRET  60
   61 TMCTALVNDE GIRISTIEHL FAALAGLGID NAVIEVDAPE IPIMDGSASP FVFLLQSAGI 120
  121 KEQSAPKKYL KIKRPVRVED GDKWAELKPF KGFRVNFKID FAHPEIARSQ QHVVMDFSTS 180
  181 AFVKDISRAR TFGFMRDIEY LRANNLALGG SMENAVVLDE YRVLNPDGLR YEDEFVKHKI 240
  241 LDAFGDLYVA GHAILGEFTA YKTGHALNNQ LVRALLAQQD AWELVSFEKE ADAPVSFTVP 300
  301 GGVVFA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.39794
Match:	1xxeA
Description:	RDC refined solution structure of the AaLpxC/TU-514 complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity	3.46483388226683	bayes_pls_golite062009
catalytic activity	1.24889475603062	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: