YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350494, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	560 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350494, gi|....

Description	E-value	Query Range	Subject Range
gi\|78688952, gi\|... - gi\|78688952\|ref\|ZP_00853618.1\| MSHA biogenesis protein MshL [Shewanella sp. MR-7], gi\|78511635\|gb\|EA...	397.0	[0..1]	[560..1]
gi\|113886500, gi... - gi\|82494965\|ref\|ZP_00880544.1\| MSHA biogenesis protein MshL [Shewanella sp. MR-4], gi\|82407209\|gb\|EA...	396.0	[0..1]	[560..1]
gi\|78505253, gi\|... - gi\|78686968\|ref\|ZP_00851727.1\| MSHA biogenesis protein MshL [Shewanella sp. ANA-3], gi\|78505253\|gb\|E...	396.0	[0..1]	[560..1]
gi\|77811754, gi\|... - gi\|77813306\|ref\|ZP_00812584.1\| type II and III secretion system protein:Secretin, N-terminal [Shewan...	380.0	[0..1]	[560..1]
gi\|82741332, gi\|... - gi\|82741332\|ref\|ZP_00904056.1\| MSHA biogenesis protein MshL [Shewanella sp. W3-18-1], gi\|82721341\|gb...	380.0	[0..1]	[560..1]
gi\|160873627, gi... - gi\|160873627\|ref\|YP_001552943.1\| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS195...	375.0	[0..1]	[560..1]
gi\|68520322, gi\|... - gi\|68541935\|ref\|ZP_00581673.1\| type II and III secretion system protein:Secretin, N-terminal [Shewan... gi\|146865295, gi... - gi\|217971714\|ref\|YP_002356465.1\| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica OS223...	373.0	[0..1]	[560..1]
gi\|114564903, gi... - gi\|69952247\|ref\|ZP_00639783.1\| type II and III secretion system protein:Secretin, N-terminal [Shewan...	367.0	[0..1]	[559..1]
gi\|78365444, gi\|... - gi\|78365444\|ref\|ZP_00835730.1\| type II and III secretion system protein:Secretin, N-terminal [Shewan...	357.0	[0..1]	[560..1]
gi\|37681131, gi\|... - gi\|37681131\|ref\|NP_935740.1\| MSHA biogenesis protein MshL [Vibrio vulnificus YJ016], gi\|37199882\|dbj...	354.0	[0..4]	[560..5]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAIKYFTPL LSLCLMACQT TDRPQPTASK EALSASMQTA SQPTPPPPAT MPDAVQRELN  60
   61 ANTLMGGLTA PMETERRIDV SAHDVDARVF FPSLVQGTPF SVAVHPDVQG TISLSLKGVT 120
  121 LSEAIQVVED IYGYEVSR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [139-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGRILRVFPA GMRTETFPLN YLYMERDGLS LTSVSSGRIS DNNNSNNNNG NSNSNNGNSG  60
   61 GNNSNSNSSN GSNASSNSSD STNGTFIRSR TKTDFWGELK ETLTAIVGDT GGGRQVVVTP 120
  121 QAGLVTIRA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.060481
Match:	PF07655.1
Description:	No description for PF07655.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [268-365]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPNELRQVRA FLSSAESHLQ RQVILEAKIL EVTLSDGYQQ GIQWDNVLGH VGNTNINFGT  60
   61 SAGTGLSDKI TSSLGGVTSL SIKGSDFNTM ISLLDTQG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [366-495]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVDVLSSPRV TASNNQKAVI KVGTDEYFVT DVSSTTVAGT TPVTTPQVEL TPFFSGIALD  60
   61 VTPQIDKDGN VLLHVHPSVI DVKEQTKDIK VSNESLELPL AQSEIRESDT VIRAASGDVV 120
  121 VIGGLMKSEN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [496-560]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IEVVSQVPLL GDIPFVGELF KNRSKQKKKT ELIIMLKPTV VGNDTWKTEL ERSKTLLDRW  60
   61 YPENK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits