YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375587, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	1257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375587, gi|....

Description	E-value	Query Range	Subject Range
gi\|121587600, gi... - gi\|121587600\|ref\|ZP_01677365.1\| hypothetical protein VC274080_0536 [Vibrio cholerae 2740-80], gi\|121... gi\|9654835, gi\|1... - gi\|9654835\|gb\|AAF93587.1\| hypothetical protein VC_0414 [Vibrio cholerae O1 biovar El Tor str. N16961... gi\|254846351, gi... - gi\|254850646\|ref\|ZP_05239996.1\| conserved hypothetical protein [Vibrio cholerae MO10], gi\|254846351\|... gi\|121630386, gi... - gi\|121727267\|ref\|ZP_01680426.1\| hypothetical protein VCV52_0410 [Vibrio cholerae V52], gi\|121630386\|... gi\|153818256, gi... - gi\|153818256\|ref\|ZP_01970923.1\| hypothetical protein A5C_0441 [Vibrio cholerae NCTC 8457], gi\|126511... gi\|11280817 - pir\|\|C82328 hypothetical protein VC0414 [imported] - Vibrio cholerae (strain N16961 serogroup O1) gi\|147673465, gi... - gi\|227116818\|ref\|YP_002818714.1\| hypothetical protein VC395_0458 [Vibrio cholerae O395], gi\|22701226... gi\|227080625, gi... - gi\|227080625\|ref\|YP_002809176.1\| hypothetical protein VCM66_0399 [Vibrio cholerae M66-2], gi\|2270085...	1310.0	[0..7]	[1257..10]
gi\|3851544, gi\|7... - pir\|\|T31119 mshQ protein - Vibrio cholerae, gi\|3851544\|gb\|AAC72349.1\| MshQ [Vibrio cholerae]	1306.0	[0..7]	[1257..10]
gi\|78688964, gi\|... - gi\|78688964\|ref\|ZP_00853630.1\| MSHA biogenesis protein MshQ [Shewanella sp. MR-7], gi\|78511647\|gb\|EA...	1166.0	[0..24]	[1257..37]
gi\|146291680, gi... - gi\|77813293\|ref\|ZP_00812571.1\| MSHA biogenesis protein MshQ [Shewanella putrefaciens CN-32], gi\|7781...	1155.0	[0..14]	[1257..27]
gi\|75816784 - gi\|75816784\|ref\|ZP_00747244.1\| COG3210: Large exoproteins involved in heme utilization or adhesion [... gi\|75828392 - gi\|75828392\|ref\|ZP_00757827.1\| COG3210: Large exoproteins involved in heme utilization or adhesion [... gi\|75829692, gi\|... - gi\|75829692\|ref\|ZP_00758987.1\| COG3210: Large exoproteins involved in heme utilization or adhesion [...	1131.0	[0..166]	[1257..1]
gi\|116217021 - gi\|116217021\|ref\|ZP_01482841.1\| hypothetical protein VchoR_02001248 [Vibrio cholerae RC385]	1131.0	[0..145]	[1257..1]
gi\|82721328, gi\|... - gi\|82741319\|ref\|ZP_00904043.1\| MSHA biogenesis protein MshQ [Shewanella sp. W3-18-1], gi\|82721328\|gb...	1076.0	[0..14]	[1201..27]
gi\|116220253 - gi\|116220253\|ref\|ZP_01485694.1\| hypothetical protein VchoV5_02001712 [Vibrio cholerae V51]	1067.0	[0..194]	[1257..179]
tr\|Q83VI4\|Q83VI4... - NAGV14pili biogenesis protein VcfQ (Fragment) OS=Vibrio cholerae non-O1 GN=vcfQ PE=4 SV=1 gi\|29788166 - gi\|29788166\|dbj\|BAC75489.1\| NAGV14pili biogenesis protein VcfQ [Vibrio cholerae non-O1]	1049.0	[0..194]	[1257..340]
gi\|117922083, gi... - gi\|78684223\|ref\|ZP_00849008.1\| MSHA biogenesis protein MshQ [Shewanella sp. ANA-3], gi\|78507975\|gb\|E...	967.0	[0..159]	[1257..154]

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Predicted Domain #1

Region A:
Residues: [1-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRAFGIGTQ LFSVLAILLM TMMSSHAAID CGSVFPGPIQ SFSSNGQLEM QNQSMVVNYD  60
   61 NLDVCFKKAK PNGVNNSSCG IGQCKVSGIP SLAKAIPDIL DKTNSSINSN STVASWTTPS 120
  121 VELGVTLGYG AKFDTTRWDI GNVEVNGGSV TVSDAYDAYV FKSVTFYQNG TMTLRAGKTY 180
  181 IIDGDLNLSL GAINIIGTGN TQFYVRGTFT TSDTSVFNAS STTDIYVGRE LELQTDSKVQ 240
  241 GSFYVAGDAT LFTRSTLTGR LSAQNVRMFS NSKVIYDT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [279-543]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPALECFTDD FSRTSLGNDW AIKVLGSSTP PSIVSNRLRI TPASGNQATA STFQRLFPAE  60
   61 NNLVTVEFDY YAWSPSSGTG GDGVAVILSD AAVTPQPGSF GGALGYAQRN DGTPGFAGGW 120
  121 LGVGLDEYGN FSNPNEGKVG RPATLPYFRP QSVTLRGSAA ASYTYLAGTA ANLNPRVDVR 180
  181 STSTAAPNHK YRIKVDSTIP SQAWVSVERD VRNGQGYQVL VPAFNARAIP NQGAVPEDFY 240
  241 LSFTGSTGGA NNNHEIDNFK VCALK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.39794
Match:	1ax0A
Description:	ERYTHRINA CORALLODENDRON LECTIN IN COMPLEX WITH N-ACTYLGALACTOSAMINE
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [544-721]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRPVGQQVHH FEFDYSSSPL TCKAETMAIR ACANANCSQL FTDPVTAQLS LNPNANGAWY  60
   61 VGGVNTPSVN FVNGLATASL RYNVSTPPVT IGVSSSIPST IAGSNTLCRK GSGPLNTASC 120
  121 TLSFAESGFI FDVPDKLANK PTSINISAVR KSNSSLECVP AFGNATKNVG FWSTYVSP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [722-878]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSIPSALQQA ITIKGNVTGA ITAIGKTQAL RTQIPLRFTN GVASLEINYP DAGRVQLDAR  60
   61 LDGTGEDTGL VMTGSDQFVS VPAGLCVKAA DASAYCPSAD MSCNAYRKAG QNFGMTLQAM 120
  121 AWEKDGDTDF CSGNLSTPNF IDAQMKLASD VVAPSIA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [879-928]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGGHDGVLGM TSYSHTAQTN NLNTISNQSI SDVGVFQIAA QATPNYLGTA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.695	d.58.1	4Fe-4S ferredoxins
View	Download	0.694	d.58.17	Metal-binding domain
View	Download	0.694	d.58.17	Metal-binding domain
View	Download	0.671	d.58.5	GlnB-like
View	Download	0.605	g.62.1	Cysteine-rich DNA binding domain, (DM domain)
View	Download	0.576	g.62.1	Cysteine-rich DNA binding domain, (DM domain)
View	Download	0.513	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.495	a.4.10	N-terminal Zn binding domain of HIV integrase
View	Download	0.479	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.477	a.35.1	lambda repressor-like DNA-binding domains

Predicted Domain #6

Region A:
Residues: [929-1165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSLNIPIGYS ANIGRFVPDR FLVGDISVLP ACGGFSYMAQ PFPMSMSIKA LNIGGAVTQN  60
   61 YFPPFSHASA KLVGENNNNG VDLQSRLSAL PVNAASWNQG VATVDGSYRA NVSRMTPNIA 120
  121 ANQYQDGPFE LLDIGVQLMD NDPRPNGLYS YVALADMDAA STGTCTNCNA RKITTQILRH 180
  181 GRVVMDNTYG PETEILKMPT RAEYWNGTNW VLNGDDSCTI ATYGLGSQVD NAGLGYN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #7

Region A:
Residues: [1166-1257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDPDLAAGQS INRTGASLAF QAGQFDLLWR AVTSSGNLYR GQVTAPLDVP TWLEWYWNWN  60
   61 GVTPSSLSDP RASGFFGRYR GHDRIIYWRE VN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.489	a.24.21	Description not found.
View	Download	0.489	a.29.4	RecG, N-terminal domain
View	Download	0.292	a.246.2	Description not found.
View	Download	0.288	a.46.1	Methionine synthase domain
View	Download	0.286	d.110.6	Description not found.
View	Download	0.278	b.1.14	Invasin/intimin cell-adhesion fragments
View	Download	0.223	c.84.1	Phosphoglucomutase, first 3 domains

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits