YRC Public Data Repository - Protein Structure Prediction

Protein:	Y4095_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y4095_SHEON.

Description	E-value	Query Range	Subject Range
gi\|77811737, gi\|... - gi\|77813289\|ref\|ZP_00812567.1\| Maf-like protein [Shewanella putrefaciens CN-32], gi\|77811737\|gb\|EAO9...	254.0	[0..1]	[192..1]
gi\|120560477, gi... - gi\|82741315\|ref\|ZP_00904039.1\| Maf-like protein [Shewanella sp. W3-18-1], gi\|82721324\|gb\|EAP56166.1\|... gi\|124545505, gi... - gi\|124545505\|ref\|ZP_01704698.1\| maf protein [Shewanella putrefaciens 200], gi\|124510848\|gb\|EAY54915....	253.0	[0..1]	[192..1]
gi\|78507971, gi\|... - gi\|78684219\|ref\|ZP_00849004.1\| Maf-like protein [Shewanella sp. ANA-3], gi\|78507971\|gb\|EAP21479.1\| M...	251.0	[0..1]	[193..1]
Y482_SHESR - Maf-like protein Shewmr7_0482 OS=Shewanella sp. (strain MR-7) GN=Shewmr7_0482 PE=3 SV=1	251.0	[0..1]	[193..1]
Y3469_SHESM - Maf-like protein Shewmr4_3469 OS=Shewanella sp. (strain MR-4) GN=Shewmr4_3469 PE=3 SV=1	250.0	[0..1]	[193..1]
gi\|68546139, gi\|... - gi\|68546139\|ref\|ZP_00585687.1\| Maf-like protein [Shewanella amazonensis SB2B], gi\|68515967\|gb\|EAN396...	248.0	[0..1]	[194..1]
Y4160_PSEU2 - Maf-like protein Psyr_4160 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=Psyr_4160 PE=3 SV=...	247.0	[0..2]	[193..3]
Y3331_SHEDO - Maf-like protein Sden_3331 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN...	246.0	[0..1]	[191..1]
Y4169_PSE14 - Maf-like protein PSPPH_4169 OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=PS...	245.0	[0..2]	[193..3]
Y841_PSEPF - Maf-like protein Pfl01_0841 OS=Pseudomonas fluorescens (strain Pf0-1) GN=Pfl01_0841 PE=3 SV=1	243.0	[0..2]	[193..3]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLVLASTSP RRKELLTHIG LGRSDFTFEQ VAPDIDETPR SGELPRDYVQ RLAAEKAQAG  60
   61 LALCSDMSQP AVLGSDTIVV LENEILGKPV DDADAKRVLR ALSGRAHTVM TAVALANANH 120
  121 TAMRLVETLV RFCVLSDADI DAYVASQEPM DKAGSYGIQG LGGCFVESID GSYSCVVGLP 180
  181 LVETRQLLSE AGII

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.69897
Match:	1ex2A
Description:	Maf protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.72783485959922	bayes_pls_golite062009
pyrophosphatase activity	0.442220291187313	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.422005572981264	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.421915415135494	bayes_pls_golite062009
protein binding	0.39728703257702	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: