YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350468, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350468, gi|....

Description	E-value	Query Range	Subject Range
gi\|82494945, gi\|... - gi\|82494945\|ref\|ZP_00880524.1\| hydrolase, carbon-nitrogen family [Shewanella sp. MR-4], gi\|82407189\|...	267.0	[0..1]	[281..1]
gi\|47214136 - gi\|47214136\|emb\|CAG01394.1\| unnamed protein product [Tetraodon nigroviridis]	267.0	[0..2]	[280..433]
gi\|114045995, gi... - gi\|78688971\|ref\|ZP_00853637.1\| hydrolase, carbon-nitrogen family [Shewanella sp. MR-7], gi\|78511654\|...	265.0	[0..1]	[281..1]
gi\|60688591, gi\|... - gi\|60688591\|gb\|AAH91101.1\| Nit2-prov protein [Xenopus tropicalis], gi\|197246228\|gb\|AAI68796.1\| Nit2 ...	264.0	[0..2]	[281..4]
gi\|78684216, gi\|... - gi\|78684216\|ref\|ZP_00849001.1\| hydrolase, carbon-nitrogen family [Shewanella sp. ANA-3], gi\|78507968...	264.0	[0..1]	[281..1]
NIT2 - nitrilase family, member 2	263.0	[0..2]	[281..5]
gi\|126698064, gi... - gi\|126698064\|ref\|YP_001086961.1\| putative carbon-nitrogen hydrolase [Clostridium difficile 630], gi\|...	263.0	[0..2]	[280..5]
gi\|109032725 - gi\|109032725\|ref\|XP_001091514.1\| PREDICTED: similar to nitrilase family, member 2 [Macaca mulatta]	262.0	[0..2]	[281..55]
gi\|77686045, gi\|... - gi\|77686045\|ref\|ZP_00801418.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Alk...	261.0	[0..1]	[280..4]

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Predicted Domain #1

Region A:
Residues: [1-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRISLLQCQS SRDVSANLLF IESQLEELTQ ERQQWGDNSP HLVVLPECSL LFGGHESQQL  60
   61 AYAGDSHHSQ LKSALSALAT RYRVFMVAGT IPALAEGGRV YSRCYLFDDK GDTLGHYDKL 120
  121 HLFDVDVADG TKQYRESETF CPGDHISVID TPFGKIGLSI CYDLRFPDLF RAMRLAGAEI 180
  181 ITVPSAFTKV TGEAHWQVLL QARAIETQCF IVAAAQWGAH NQGSRETWGQ SMVIGPWGNI 240
  241 IAERKTGTGW VHADIDLTEV NSIRSKMPVM QHNRFNVPMI KR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.221849
Match:	1f89A
Description:	hypothetical protein yl85
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.64442398754697	bayes_pls_golite062009
hydrolase activity	1.04460236807872	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.472813950465394	bayes_pls_golite062009
binding	0.390566185852462	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: