YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375387, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	628 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375387, gi|....

Description	E-value	Query Range	Subject Range
gi\|147921290, gi... - gi\|147921290\|ref\|YP_684896.1\| type II DNA topoisomerase II (gyrase), subunit B [uncultured methanoge...	917.0	[0..2]	[626..7]
gi\|52078497, gi\|... - gi\|52078497\|ref\|YP_077288.1\| DNA gyrase subunit B [Bacillus licheniformis ATCC 14580], gi\|52001708\|g...	909.0	[0..3]	[626..7]
gi\|88951625, gi\|... - gi\|88951625\|ref\|ZP_01154102.1\| DNA gyrase, B subunit [Methanosaeta thermophila PT], gi\|88929302\|gb\|E...	909.0	[0..1]	[626..1]
GYRB_BACSU - DNA gyrase subunit B OS=Bacillus subtilis GN=gyrB PE=3 SV=1 gi\|221312137 - gi\|221312137\|ref\|ZP_03593942.1\| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. NCIB 36... GYRB_BACSU - DNA gyrase subunit B OS=Bacillus subtilis (strain 168) GN=gyrB PE=3 SV=1 gi\|221317070 - gi\|221317070\|ref\|ZP_03598364.1\| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. JH642] gi\|221321333 - gi\|221321333\|ref\|ZP_03602627.1\| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. SMY]	906.0	[0..3]	[626..6]
gi\|1546916 - gi\|1546916\|emb\|CAA69221.1\| subunit B of DNA gyrase [Salmonella typhimurium] gi\|1546916\|emb\|C... - subunit B of DNA gyrase [Salmonella typhimurium]	904.0	[0..1]	[628..1]
gi\|81243376, gi\|... - gi\|82779228\|ref\|YP_405577.1\| DNA gyrase subunit B [Shigella dysenteriae Sd197], gi\|81243376\|gb\|ABB64...	903.0	[0..1]	[628..1]
gi\|218367543, gi... - gi\|218560774\|ref\|YP_002393687.1\| DNA gyrase subunit B [Escherichia coli S88], gi\|218367543\|emb\|CAR05... gi\|218429551, gi... - gi\|218691987\|ref\|YP_002400199.1\| DNA gyrase subunit B [Escherichia coli ED1a], gi\|218429551\|emb\|CAR1... gi\|110644042, gi... - gi\|110644042\|ref\|YP_671772.1\| DNA gyrase subunit B [Escherichia coli 536], gi\|110345634\|gb\|ABG71871.... gi\|227883920, gi... - gi\|227883920\|ref\|ZP_04001725.1\| DNA gyrase subunit B [Escherichia coli 83972], gi\|227839198\|gb\|EEJ49... gi\|190909423, gi... - gi\|75242511\|ref\|ZP_00726255.1\| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV... gi\|115515099, gi... - gi\|117625975\|ref\|YP_859298.1\| DNA gyrase subunit B [Escherichia coli APEC O1], gi\|115515099\|gb\|ABJ03...	902.0	[0..1]	[628..1]
gi\|26110870, gi\|... - gi\|26250440\|ref\|NP_756480.1\| DNA gyrase subunit B [Escherichia coli CFT073], gi\|26110870\|gb\|AAN83054... gi\|91213221, gi\|... - gi\|91213221\|ref\|YP_543207.1\| DNA gyrase subunit B [Escherichia coli UTI89], gi\|91074795\|gb\|ABE09676.... gi\|237703499, gi... - gi\|237703499\|ref\|ZP_04533980.1\| subunit B [Escherichia sp. 3_2_53FAA], gi\|226902763\|gb\|EEH89022.1\| s...	902.0	[0..1]	[628..2]

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Predicted Domain #1

Region A:
Residues: [1-391]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNQYTSDAI EVLNGLDPVK RRPGMYTDTT RPNHLGQEVI DNSVDEALAG HATKIEVVLH  60
   61 TDNSLEVTDD GRGMPVDIHP EEGIPGVELI LTKLHAGGKF SNKNYQFSGG LHGVGISVVN 120
  121 ALSRRVEVTV RRDGQVYDIA FENGFKVEEL KVTGTCGRRN TGTRVHFWPD TSYFDSPNFS 180
  181 NSKLIYLLRA KAVLCPGLRI KFTNKHTNEV HEWYYESGLT DYLKAAVGDN IMLPEEPFIG 240
  241 SFKGQIEAAD WAITWLPEGG ESINESYVNL IPTPLGGTHV NGFRQGLLES MREFCEFRNL 300
  301 IPRGIKLSPE DIWDRAAFIL SVKMQDPQFA GQTKEKLSSR QSSAFVSGIV RDAFSLWLNS 360
  361 NTELAESLAE MCINNAQKRL KAAKKVARKK V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	140.0
Match:	1s16A
Description:	Crystal Structure of E. coli Topoisomerase IV ParE 43kDa subunit complexed with ADPNP
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [392-628]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSGPALPGKL TDCSGQDPMR GELFLVEGDS AGGSAKQARD REFQAIMPLR GKILNTWEVD  60
   61 ASQVLASQEV HDISVAIGCD PDSNDISELR YGKICILADA DSDGLHIATL LCALFLKHYR 120
  121 VLVEQGHVYI AMPPLFRIDI GKDVYYALDD AEKEGVLDRI NAENKKGKVQ VTRFKGLGEM 180
  181 NPLQLRETTM DPNTRRLVQL TIDDAEETDS LMDMLLAKKR SPDRKNWLED KGDMAVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.154902
Match:	1bgwA
Description:	TOPOISOMERASE RESIDUES 410-1202,
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits