YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350104, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350104, gi|....

Description	E-value	Query Range	Subject Range
gi\|121547851, gi... - gi\|121587881\|ref\|ZP_01677637.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Vibrio cholerae 2740-8... UBIX_VIBCH - Flavin prenyltransferase UbiX OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N1696... gi\|153801090, gi... - gi\|153801090\|ref\|ZP_01955676.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Vibrio cholerae MZO-3]... gi\|153222006, gi... - gi\|153222006\|ref\|ZP_01952833.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Vibrio cholerae MAK 75... gi\|153822964, gi... - gi\|229509671\|ref\|ZP_04399152.1\| 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX [Vibrio cholerae B... gi\|126511464, gi... - gi\|153818029\|ref\|ZP_01970696.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Vibrio cholerae NCTC 8... gi\|254291456, gi... - gi\|254291456\|ref\|ZP_04962248.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Vibrio cholerae AM-192... gi\|149740504, gi... - gi\|153825781\|ref\|ZP_01978448.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Vibrio cholerae MZO-2]... gi\|229354909, gi... - gi\|229507404\|ref\|ZP_04396909.1\| 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX [Vibrio cholerae B... gi\|227082659, gi... - gi\|227082659\|ref\|YP_002811210.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Vibrio cholerae M66-2... gi\|229606911, gi... - gi\|229606911\|ref\|YP_002877559.1\| 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX [Vibrio cholerae ... PAAD_VIBCH - Probable aromatic acid decarboxylase OS=Vibrio cholerae GN=VC_2541 PE=3 SV=1 gi\|229345859, gi... - gi\|229516796\|ref\|ZP_04406242.1\| 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX [Vibrio cholerae R... gi\|254851083, gi... - gi\|254851083\|ref\|ZP_05240433.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Vibrio cholerae MO10],...	242.0	[0..1]	[216..1]
gi\|229341199, gi... - gi\|229521605\|ref\|ZP_04411023.1\| 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX [Vibrio cholerae T... tr\|A0A085RTE9\|A0... - Polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein OS=Vibrio cholerae ... gi\|116220720, gi... - gi\|75820167\|ref\|ZP_00750221.1\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Vibrio cholera...	240.0	[0..4]	[216..1]
gi\|226942951, gi... - gi\|67157818\|ref\|ZP_00418963.1\| Flavoprotein [Azotobacter vinelandii AvOP], gi\|67085087\|gb\|EAM04563.1... gi\|53610053, gi\|... - gi\|67157818\|ref\|ZP_00418963.1\| Flavoprotein [Azotobacter vinelandii AvOP], ref\|ZP_00088579.2\| COG016...	240.0	[0..7]	[213..4]
gi\|116189430, gi... - gi\|75830527\|ref\|ZP_00759803.1\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Vibrio cholera...	240.0	[0..4]	[216..1]
gi\|116216911, gi... - gi\|75822781\|ref\|ZP_00752347.1\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Vibrio cholera...	238.0	[0..4]	[216..1]
gi\|78510439, gi\|... - gi\|78690160\|ref\|ZP_00854811.1\| Phenylacrylic acid decarboxylase [Shewanella sp. MR-7], gi\|78510439\|g... gi\|82496943, gi\|... - gi\|82496943\|ref\|ZP_00882505.1\| Phenylacrylic acid decarboxylase [Shewanella sp. MR-4], gi\|82405070\|g...	238.0	[0..1]	[219..1]
gi\|91187602, gi\|... - gi\|91228831\|ref\|ZP_01262737.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Vibrio alginolyticus 12...	238.0	[0..7]	[213..10]
gi\|49079190 - gi\|49079190\|gb\|AAT49864.1\| PA4019 [synthetic construct]	238.0	[0..9]	[216..6]
gi\|75827796 - gi\|75827796\|ref\|ZP_00757231.1\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Vibrio cholera... gi\|75815975 - gi\|75815975\|ref\|ZP_00746460.1\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Vibrio cholera... tr\|A0A085PIW9\|A0... - Polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein OS=Vibrio cholerae ...	238.0	[0..4]	[216..1]
gi\|17228736, gi\|... - gi\|17228736\|ref\|NP_485284.1\| aromatic acid decarboxylase [Nostoc sp. PCC 7120], gi\|17130588\|dbj\|BAB7... gi\|25299174 - pir\|\|AF1961 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [imported] - Nostoc sp. (strain PCC 7120)	238.0	[0..3]	[213..1]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYAKSSKAI SLAWTGASGA PYGLKLLECL LASGYQVFLM ISSAARVVLA TEHGLQLSAN  60
   61 SDKAKAQLLD VLAQKNIPLS GELVVLGKDE WFSPPASGSA APKQMVICPC STGTLAAVAT 120
  121 GMSNNLLERA ADVVLKERGQ LILVPRETPF NAIHLEHMLN LSRLGATIMP AAPGFYHNPK 180
  181 SVEDLIDFMV ARILDHLGVD HALTSRWGYD KHSPNDIDN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.0
Match:	1sbzA
Description:	Crystal Structure of dodecameric FMN-dependent Ubix-like Decarboxylase from Escherichia coli O157:H7
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity	5.88631349530005	bayes_pls_golite062009
carboxy-lyase activity	2.27469953971238	bayes_pls_golite062009
catalytic activity	1.88716391063227	bayes_pls_golite062009
carbon-carbon lyase activity	1.67751595868044	bayes_pls_golite062009
phosphopantothenoylcysteine decarboxylase activity	1.6488492075417	bayes_pls_golite062009
lyase activity	0.646446561158526	bayes_pls_golite062009
phosphopantothenate--cysteine ligase activity	0.35505046579356	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: