YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375285, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	396 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375285, gi|....

Description	E-value	Query Range	Subject Range
CG6154-PD, CG6154-PC - This gene is referred to in FlyBase by the symbol Dmel\CG6154 (CG6154, FBgn0039420). It is a protein...	389.0	[0..20]	[394..54]
gi\|125776052, gi... - gi\|54638894\|gb\|EAL28296.1\| GA19396-PA [Drosophila pseudoobscura], gi\|125776052\|ref\|XP_001359152.1\| G...	388.0	[0..20]	[394..45]
gi\|108878803, gi... - gi\|157110094\|ref\|XP_001650949.1\| microsomal dipeptidase [Aedes aegypti], gi\|108878803\|gb\|EAT43028.1\|...	387.0	[0..4]	[394..21]
DPEP2 - dipeptidase 2	386.0	[0..9]	[394..61]
DPEP1_RABIT - Dipeptidase 1 OS=Oryctolagus cuniculus GN=DPEP1 PE=1 SV=1	385.0	[0..9]	[394..8]
gi\|118782476, gi... - gi\|118782476\|ref\|XP_312292.3\| ENSANGP00000020971 [Anopheles gambiae str. PEST], gi\|116129586\|gb\|EAA0...	384.0	[0..20]	[394..1]
gi\|109129539, gi... - gi\|109129541\|ref\|XP_001091741.1\| PREDICTED: dipeptidase 1 (renal) isoform 5 [Macaca mulatta], gi\|109...	384.0	[0..8]	[394..4]

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Predicted Domain #1

Region A:
Residues: [1-396]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAINHRRRT LLKGLSAVTG LSAASALSPF ASFSSLAAPL PPRARRLYID GLSFLPDDLA  60
   61 DVRASGLDAF LCDISAIETI EQADGTVNYK RTYKACMESI QQAAKRVSEH PDILLQGLTG 120
  121 RDIQLARENN RTAVFFQIQG ADCVEEDSDA NQWARVDAFH RQGLCALQLT HHYGNTFAGG 180
  181 ALDNDANGGL NKPLTNHGRA LIAKLNQANI LIDVSHSSAQ TALDVAKLSR APIVQSHGAA 240
  241 RGIVKHARCS PDEVIRAIAN SGGVFGVFMM SFWLTNKAIP TVNDYIRQLE YVARIGGVDC 300
  301 VAIANDFPLR GQENLLALNN DNTQGVKEYQ DWWYSLRAKK VLGFDAEPRH VVIPELNHIE 360
  361 RMSRIDDALA KARFKSTDRD RFMGGNWHRV LNQVLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	105.0
Match:	1itqA
Description:	Renal dipeptidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	2.95973123088728	bayes_pls_golite062009
catalytic activity	2.072432847481	bayes_pls_golite062009
peptidase activity	0.531944091157011	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.481958484200481	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides	0.0337217238364798	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.00144841848163502	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: