YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375172, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	338 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375172, gi|....

Description	E-value	Query Range	Subject Range
gi\|76167036, gi\|... - gi\|76257950\|ref\|ZP_00765607.1\| transport system permease protein [Chloroflexus aurantiacus J-10-fl],...	243.0	[0..3]	[336..64]
gi\|20089997, gi\|... - gi\|20089997\|ref\|NP_616072.1\| iron ABC transporter, permease protein [Methanosarcina acetivorans C2A]...	241.0	[0..3]	[337..15]
gi\|67987421, gi\|... - gi\|69285730\|ref\|ZP_00617069.1\| transport system permease protein [Kineococcus radiotolerans SRS30216...	241.0	[0..26]	[334..580]
gi\|68185993, gi\|... - gi\|91773082\|ref\|YP_565774.1\| ABC Fe3+-siderophore transporter, inner membrane subunit [Methanococcoi...	236.0	[0..3]	[336..37]
gi\|72395868, gi\|... - gi\|73668706\|ref\|YP_304721.1\| iron ABC transporter, permease protein [Methanosarcina barkeri str. Fus...	235.0	[0..3]	[337..22]
gi\|83375265, gi\|... - gi\|83375265\|ref\|ZP_00920028.1\| similar to ABC-type Fe3+-siderophore transport system permease compon...	232.0	[0..18]	[335..440]
gi\|25296945 - pir\|\|AB2129 iron(III) dicitrate transport system permease protein all2585 [imported] - Nostoc sp. (s... gi\|17230077, gi\|... - gi\|17230077\|ref\|NP_486625.1\| iron(III) dicitrate transport system permease protein [Nostoc sp. PCC 7...	232.0	[0..3]	[336..20]
gi\|114845489, gi... - gi\|167039782\|ref\|YP_001662767.1\| transport system permease protein [Thermoanaerobacter sp. X514], gi... gi\|167037070, gi... - gi\|76796307\|ref\|ZP_00778672.1\| transport system permease protein [Thermoanaerobacter ethanolicus ATC... gi\|241884179, gi... - gi\|241903412\|ref\|ZP_04788136.1\| transport system permease protein [Thermoanaerobacter brockii subsp.... gi\|242230699, gi... - gi\|242257758\|ref\|ZP_04802610.1\| transport system permease protein [Thermoanaerobacter sp. X513], gi\|...	228.0	[0..1]	[336..17]
gi\|72162784, gi\|... - gi\|72162784\|ref\|YP_290441.1\| FecCD-family membrane transport protein [Thermobifida fusca YX], gi\|719... gi\|48837000 - ref\|ZP_00293995.1\| COG0609: ABC-type Fe3+-siderophore transport system, permease component [Thermobi...	227.0	[0..2]	[336..27]
gi\|214034358, gi... - gi\|254479701\|ref\|ZP_05092994.1\| ABC transporter, FeCT family, permease protein [Carboxydibrachium pa... gi\|20808280 - gi\|20808280\|ref\|NP_623451.1\| ABC-type cobalamin/Fe3+-siderophores transport systems, permease compon... gi\|20516881, gi\|... - gi\|20808280\|ref\|NP_623451.1\| ABC-type cobalamin/Fe3+-siderophores transport systems, permease compon...	227.0	[0..1]	[336..17]

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Predicted Domain #1

Region A:
Residues: [1-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQYRWLWPT MMMLLILSSI LSVSVGPVSI SLMDSLSAVF NWATQQSIGN IAPHEQLVVS  60
   61 NVRLPRTLLA LTVGAILAQC GAVMQGLFRN PLADPGIIGV SSGAALGAAI CIVLFPDVGS 120
  121 LMISLGAFLC GLATTLIVYR LASNGLGTSV VLLLLSGVAI AALAGAGIGV LTYLANDMAL 180
  181 RDLTLWQMGS IAGAQWQYVG LCLLVLVLLS WRFQRDAMAL NALLLGEAEA RHLGINVDRL 240
  241 KLRLILLCAL GVGVSVAATG IIGFIGLVVP HLVRMILGPD HKRLLPMSAL LGAALLALAD 300
  301 IGARTFLPPA ELPVSLVTAL IGAPFFIFLL LQQRSKLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.522879
Match:	2nq2A
Description:	No description for 2nq2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits