YRC Public Data Repository - Protein Structure Prediction

Protein:	TAL_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	318 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAL_SHEON.

Description	E-value	Query Range	Subject Range
TAL_HAES1 - Transaldolase OS=Haemophilus somnus (strain 129Pt) GN=tal PE=3 SV=1	424.0	[0..1]	[315..1]
gi\|227835850, gi... - gi\|227887500\|ref\|ZP_04005305.1\| transaldolase [Escherichia coli 83972], gi\|227835850\|gb\|EEJ46316.1\| ... gi\|238901627, gi... - gi\|238901627\|ref\|YP_002927423.1\| transaldolase A [Escherichia coli BW2952], gi\|238863674\|gb\|ACR65672... EG11797 - transaldolase A / Transaldolase A; creBC regulon gi\|251785790, gi... - gi\|251785790\|ref\|YP_003000094.1\| hypothetical protein B21_02317 [Escherichia coli BL21], gi\|24237806... gi\|253772645, gi... - gi\|254289199\|ref\|YP_003054947.1\| transaldolase A [Escherichia coli BL21(DE3)], gi\|253978506\|gb\|ACT44... gi\|254162438, gi... - gi\|254162438\|ref\|YP_003045546.1\| transaldolase A [Escherichia coli B str. REL606], gi\|253974339\|gb\|A... gi\|254593808, gi... - gi\|254794408\|ref\|YP_003079245.1\| transaldolase A [Escherichia coli O157:H7 str. TW14359], gi\|2545938... TALA_ECO57 - Transaldolase A OS=Escherichia coli O157:H7 GN=talA PE=3 SV=1 TALA_ECOL6 - Transaldolase A OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=talA PE=3 SV=1 TALA_ECOLI - Transaldolase A (EC 2.2.1.2) - Escherichia coli gi\|15802986, gi\|... - gi\|15802986\|ref\|NP_289016.1\| transaldolase A [Escherichia coli O157:H7 EDL933], gi\|12516839\|gb\|AAG57... EG11797 - transaldolase A / Transaldolase A; creBC regulon gi\|75515800, gi\|... - gi\|75515800\|ref\|ZP_00737935.1\| COG0176: Transaldolase [Escherichia coli 53638], gi\|188494053\|ref\|ZP_... gi\|75211425, gi\|... - gi\|75211425\|ref\|ZP_00711515.1\| COG0176: Transaldolase [Escherichia coli B171], gi\|194427358\|ref\|ZP_0... gi\|168773632, gi... - gi\|187770620\|gb\|EDU34464.1\| transaldolase [Escherichia coli O157:H7 str. EC4196], gi\|168773632\|ref\|Z... gi\|157161923, gi... - gi\|75196469\|ref\|ZP_00706539.1\| COG0176: Transaldolase [Escherichia coli HS], gi\|157161923\|ref\|YP_001... gi\|189003377, gi... - gi\|189003377\|gb\|EDU72363.1\| transaldolase [Escherichia coli O157:H7 str. EC4076], gi\|168778421\|ref\|Z... gi\|75187208, gi\|... - gi\|75187208\|ref\|ZP_00700475.1\| COG0176: Transaldolase [Escherichia coli E24377A], gi\|157155721\|ref\|Y... gi\|189372373, gi... - gi\|189372373\|gb\|EDU90789.1\| transaldolase [Escherichia coli O157:H7 str. EC869], gi\|168787801\|ref\|ZP... gi\|83586888, gi\|... - gi\|83586888\|ref\|ZP_00925519.1\| COG0176: Transaldolase [Escherichia coli 101-1], gi\|194437684\|ref\|ZP_... gi\|189378580, gi... - gi\|189378580\|gb\|EDU96996.1\| transaldolase [Escherichia coli O157:H7 str. EC508], gi\|168798826\|ref\|ZP... gi\|192927612, gi... - gi\|75257267\|ref\|ZP_00728791.1\| COG0176: Transaldolase [Escherichia coli E22], gi\|193064729\|ref\|ZP_03... gi\|170019252, gi... - gi\|170019252\|ref\|YP_001724206.1\| transaldolase A [Escherichia coli ATCC 8739], gi\|169754180\|gb\|ACA76... gi\|75240113, gi\|... - gi\|75240113\|ref\|ZP_00724072.1\| COG0176: Transaldolase [Escherichia coli F11], gi\|191172956\|ref\|ZP_03... gi\|170082073, gi... - gi\|170082073\|ref\|YP_001731393.1\| transaldolase A [Escherichia coli str. K-12 substr. DH10B], gi\|1698... gi\|193068394, gi... - gi\|75237793\|ref\|ZP_00721809.1\| COG0176: Transaldolase [Escherichia coli E110019], gi\|193068394\|ref\|Z... gi\|170521090, gi... - gi\|170683372\|ref\|YP_001744646.1\| transaldolase [Escherichia coli SMS-3-5], gi\|170521090\|gb\|ACB19268.... gi\|75229214, gi\|... - gi\|75229214\|ref\|ZP_00715782.1\| COG0176: Transaldolase [Escherichia coli B7A], gi\|191167654\|ref\|ZP_03... gi\|195936605 - gi\|195936605\|ref\|ZP_03081987.1\| transaldolase A [Escherichia coli O157:H7 str. EC4024] gi\|1799888, gi\|2... - gi\|89109269\|ref\|AP_003049.1\| transaldolase A [Escherichia coli str. K-12 substr. W3110], gi\|2337774\|... gi\|15832580, gi\|... - gi\|15832580\|ref\|NP_311353.1\| transaldolase A [Escherichia coli O157:H7 str. Sakai], gi\|13362796\|dbj\|... gi\|168748487, gi... - gi\|188017008\|gb\|EDU55130.1\| transaldolase [Escherichia coli O157:H7 str. EC4113], gi\|168748487\|ref\|Z... gi\|189356652, gi... - gi\|189356652\|gb\|EDU75071.1\| transaldolase [Escherichia coli O157:H7 str. EC4401], gi\|168756227\|ref\|Z... gi\|189368443, gi... - gi\|189368443\|gb\|EDU86859.1\| transaldolase [Escherichia coli O157:H7 str. EC4501], gi\|168761064\|ref\|Z... gi\|168768547, gi... - gi\|189362307\|gb\|EDU80726.1\| transaldolase [Escherichia coli O157:H7 str. EC4486], gi\|168768547\|ref\|Z... gi\|218705962, gi... - gi\|218705962\|ref\|YP_002413481.1\| transaldolase A [Escherichia coli UMN026], gi\|218433059\|emb\|CAR1395... gi\|110344228, gi... - gi\|110642636\|ref\|YP_670366.1\| transaldolase A [Escherichia coli 536], gi\|110344228\|gb\|ABG70465.1\| tr... gi\|124499636, gi... - gi\|124529776\|ref\|ZP_01700653.1\| transaldolase [Escherichia coli B], gi\|124499636\|gb\|EAY47121.1\| tran... TALA_ECOL6 - Transaldolase A OS=Escherichia coli O6 GN=talA PE=3 SV=1 gi\|208727907, gi... - gi\|208808106\|ref\|ZP_03250443.1\| transaldolase [Escherichia coli O157:H7 str. EC4206], gi\|208727907\|g... gi\|208812406, gi... - gi\|208812406\|ref\|ZP_03253735.1\| transaldolase [Escherichia coli O157:H7 str. EC4045], gi\|208733683\|g... gi\|208741170, gi... - gi\|208821047\|ref\|ZP_03261367.1\| transaldolase [Escherichia coli O157:H7 str. EC4042], gi\|208741170\|g... gi\|209160596, gi... - gi\|209399196\|ref\|YP_002271932.1\| transaldolase [Escherichia coli O157:H7 str. EC4115], gi\|209160596\|... gi\|209913195, gi... - gi\|209919936\|ref\|YP_002294020.1\| transaldolase A [Escherichia coli SE11], gi\|209913195\|dbj\|BAG78269.... gi\|217327002, gi... - gi\|217327002\|ref\|ZP_03443085.1\| transaldolase [Escherichia coli O157:H7 str. TW14588], gi\|217319369\|... gi\|218554987, gi... - gi\|218554987\|ref\|YP_002387900.1\| transaldolase A [Escherichia coli IAI1], gi\|218361755\|emb\|CAQ99352.... gi\|218352822, gi... - gi\|218696090\|ref\|YP_002403757.1\| transaldolase A [Escherichia coli 55989], gi\|218352822\|emb\|CAU98610...	424.0	[0..3]	[316..2]
TAL_HISS2 - Transaldolase OS=Histophilus somni (strain 2336) GN=tal PE=3 SV=1	424.0	[0..1]	[315..1]
TAL_SHESM - Transaldolase OS=Shewanella sp. (strain MR-4) GN=tal PE=3 SV=1	424.0	[0..1]	[318..1]
gi\|91211793, gi\|... - gi\|91211793\|ref\|YP_541779.1\| transaldolase A [Escherichia coli UTI89], gi\|91073367\|gb\|ABE08248.1\| tr... gi\|117624660, gi... - gi\|117624660\|ref\|YP_853573.1\| transaldolase A [Escherichia coli APEC O1], gi\|115513784\|gb\|ABJ01859.1... gi\|218366168, gi... - gi\|218559399\|ref\|YP_002392312.1\| transaldolase A [Escherichia coli S88], gi\|218366168\|emb\|CAR03914.1...	424.0	[0..3]	[316..2]
TAL_SHESA - Transaldolase OS=Shewanella sp. (strain ANA-3) GN=tal PE=3 SV=1	424.0	[0..1]	[318..1]
gi\|62126210, gi\|... - gi\|62178577\|ref\|YP_214994.1\| transaldolase [Salmonella enterica subsp. enterica serovar Choleraesuis...	423.0	[0..1]	[316..24]
TAL_SHESR - Transaldolase OS=Shewanella sp. (strain MR-7) GN=tal PE=3 SV=1	423.0	[0..1]	[318..1]
TAL_SHEAM - Transaldolase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=tal PE=3 SV=1	422.0	[0..1]	[317..1]
TAL_METAM - Transaldolase OS=Methylomonas aminofaciens GN=tal PE=3 SV=1	421.0	[0..1]	[316..1]

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Predicted Domain #1

Region A:
Residues: [1-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANTLEQLKS YTTIVADTGD IEAIKRYQPE DATTNPSLIL KAAQIPEYSA LIDNAIAWAK  60
   61 LQSTDIEQQI DDASDKLAVN IGVEILKLVP GRISTEVDAR LSFDKEKSIA KAHKLVRLYQ 120
  121 EAGVDKSRIL IKLASTWEGI CAAKELEQEG INCNLTLLFS FSQARACAEA GVYLISPFVG 180
  181 RILDWYKKDT GKDYDAVNDP GVVSVTEIYN YYKQHGYNTV VMGASFRNIG EIIELAGCDR 240
  241 LTIGPSLLEE LANSQLAIQP KLVPTSTTVA VAEPLTEAQF RWEFNQDAMA VDKLAEGIRN 300
  301 FAIDQGKLEV MLKAKLAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	117.0
Match:	1ucwA
Description:	Transaldolase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring aldehyde or ketonic groups	3.28746773527289	bayes_pls_golite062009
transaldolase activity	2.77878684721788	bayes_pls_golite062009
catalytic activity	2.67031204377352	bayes_pls_golite062009
fructose-bisphosphate aldolase activity	2.03916133349076	bayes_pls_golite062009
fructose binding	1.42916270771409	bayes_pls_golite062009
porphobilinogen synthase activity	0.658378297259497	bayes_pls_golite062009
binding	0.467753048702448	bayes_pls_golite062009
transferase activity	0.464721888799972	bayes_pls_golite062009
aldehyde-lyase activity	0.351872954170322	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: